RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 GARNL3Q5VVW2 1013 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 OR4C11Q6IEV9 310 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 TMEM214Q6NUQ4 689 aaKnown RBP11.4□□□□□ -0.58
PTPRF-208ENST00000437607 NIPAL1Q6NVV3 410 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 CCDC121Q6ZUS5 278 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 IKBIPQ70UQ0 350 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 FITM2Q8N6M3 262 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 OR11G2Q8NGC1 345 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 DNAJB14Q8TBM8 379 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 UTP15Q8TED0 518 aaKnown RBP11.4□□□□□ -0.58
PTPRF-208ENST00000437607 FAR1Q8WVX9 515 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 ZNF285Q96NJ3 590 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 SORBS1Q9BX66 1292 aaKnown RBP11.4□□□□□ -0.58
PTPRF-208ENST00000437607 AICDAQ9GZX7 198 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 KLHL31Q9H511 634 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 SOX17Q9H6I2 414 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-208ENST00000437607 ANKHQ9HCJ1 492 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 MYNNQ9NPC7 610 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 LYARQ9NX58 379 aaKnown RBP11.4□□□□□ -0.58
PTPRF-208ENST00000437607 CTSFQ9UBX1 484 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 GPR45Q9Y5Y3 372 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 A0A0A6YYD5 115 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 FITM1A5D6W6 292 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 VSTM2BA6NLU5 285 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 B3GALT2O43825 422 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 PRMT3O60678 531 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 ZG16O60844 167 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 GUCY1B2O75343 617 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 EEDO75530 441 aaKnown RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 SLC22A3O75751 556 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 KLHL18O94889 574 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 SCELO95171 688 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 GBAP04062 536 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 DDX5P17844 614 aaKnown RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 POU3F2P20265 443 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 GPX3P22352 226 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 ATP5A1P25705 553 aaKnown RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 TPP2P29144 1249 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 PRDX6P30041 224 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 RPL3P39023 403 aaKnown RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 OR1D4P47884 311 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 ARSFP54793 590 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 RAE1P78406 368 aaKnown RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 BTN3A2P78410 334 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 ZNF169Q14929 603 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 ZSCAN26Q16670 478 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 DPY19L1Q2PZI1 675 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 DEFB134Q4QY38 66 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 AGAP7PQ5VUJ5 663 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 B3GNTL1Q67FW5 361 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 PAOXQ6QHF9 649 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 ZNF793Q6ZN11 406 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 GK5Q6ZS86 529 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 SLC34A3Q8N130 599 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 TMEM132CQ8N3T6 1108 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 ZCCHC7Q8N3Z6 543 aaKnown RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 METTL27Q8N6F8 245 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 GLB1L3Q8NCI6 653 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 CATSPER1Q8NEC5 780 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 OR9I1Q8NGQ6 314 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 CMTM5Q96DZ9 223 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 C11orf24Q96F05 449 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 C10orf90Q96M02 699 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 AGAP4Q96P64 663 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 SERINC2Q96SA4 455 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 SLX1AQ9BQ83 275 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 CCDC106Q9BWC9 280 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 FAIM2Q9BWQ8 316 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 ZNF717Q9BY31 904 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 LHPPQ9H008 270 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 DDX31Q9H8H2 851 aaKnown RBP11.39□□□□□ -0.59
PTPRF-208ENST00000437607 MIEF1Q9NQG6 463 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 CUTCQ9NTM9 273 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 TMEM45AQ9NWC5 275 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 CCDC167Q9P0B6 97 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 PHF11Q9UIL8 331 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 SLC22A7Q9Y694 548 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 SPACA6W5XKT8 324 aa11.39□□□□□ -0.59
PTPRF-208ENST00000437607 F8P00451 2351 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 ZNF860A6NHJ4 632 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 SCAMP2O15127 329 aaKnown RBP11.38□□□□□ -0.59
PTPRF-208ENST00000437607 UBOX5O94941 541 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 LRATO95237 230 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 IL3P08700 152 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 COX7A2P14406 83 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 PRPS1L1P21108 318 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 TACR1P25103 407 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 AVPR1BP47901 424 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 EMP3P54852 163 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 TAS2R50P59544 299 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 TRA2BP62995 288 aaKnown RBP11.38□□□□□ -0.59
PTPRF-208ENST00000437607 KLC1Q07866 573 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 RCAN2Q14206 197 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 KRT72Q14CN4 511 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 TIGD2Q4W5G0 525 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 YOD1Q5VVQ6 348 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-208ENST00000437607 LINC00696Q6ZRV3 163 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 R3HCC1LQ7Z5L2 792 aaKnown RBP11.38□□□□□ -0.59
PTPRF-208ENST00000437607 UBE3DQ7Z6J8 389 aa11.38□□□□□ -0.59
PTPRF-208ENST00000437607 SNX32Q86XE0 403 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms