RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 ROBO1Q9Y6N7 1651 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 OR5K4A6NMS3 321 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 FBP2O00757 339 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 SYPP08247 313 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 GPR143P51810 404 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 TMEM69Q5SWH9 247 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 NANOGP8Q6NSW7 305 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 C1orf74Q96LT6 269 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 NANOGQ9H9S0 305 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 RXFP3Q9NSD7 469 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 MAN2C1Q9NTJ4 1040 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 C1orf226A1L170 272 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 VSTM2BA6NLU5 285 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 DFNA5O60443 496 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 MPC1LP0DKB6 136 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 CD1DP15813 335 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 HHEXQ03014 270 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 PLGLAQ15195 96 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 SLC36A3Q495N2 470 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 CCDC58Q4VC31 144 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 TMEM35AQ53FP2 167 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 FAM180BQ6P0A1 224 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 ELMOD2Q8IZ81 293 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 IL17RCQ8NAC3 791 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 CPT1CQ8TCG5 803 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 ACSL6Q9UKU0 697 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 HIF3AQ9Y2N7 669 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 I3L521 148 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 HOXB9P17482 250 aaPredicted RBP14.73□□□□□ -0.05
PTPRF-206ENST00000429895 HK3P52790 923 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 FAM205BPQ63HN1 556 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 SLC27A4Q6P1M0 643 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 IGFN1Q86VF2 1251 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 MRGPRX2Q96LB1 330 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 C6orf136Q5SQH8 315 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 EEF1A1P5Q5VTE0 462 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 TRIB2Q92519 343 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 USB1Q9BQ65 265 aaKnown RBP14.73□□□□□ -0.05
PTPRF-206ENST00000429895 PAAF1Q9BRP4 392 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 YTHDF1Q9BYJ9 559 aaKnown RBP14.73□□□□□ -0.05
PTPRF-206ENST00000429895 MKLN1Q9UL63 735 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 LRRC42Q9Y546 428 aa14.73□□□□□ -0.05
PTPRF-206ENST00000429895 SH3PXD2BA1X283 911 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 IL1RNP18510 177 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 FRKP42685 505 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 SLC18A1P54219 525 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 SIM1P81133 766 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 RUNX3Q13761 415 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 NEIL3Q8TAT5 605 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 SECISBP2Q96T21 854 aaKnown RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 PIP5K1AQ99755 562 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 KATNBL1Q9H079 304 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 SLCO3A1Q9UIG8 710 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 ADGRB2O60241 1585 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 A0A0A6YYH2 397 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 A6NJ64 397 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 ACOT7O00154 380 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 ZNF404Q494X3 552 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 IER5LQ5T953 404 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 PSAPL1Q6NUJ1 521 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 TUBA3EQ6PEY2 450 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 RCBTB1Q8NDN9 531 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 OR5T1Q8NG75 326 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 CREB3L4Q8TEY5 395 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 SGTBQ96EQ0 304 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 ARHGAP39Q9C0H5 1083 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 SLC19A2O60779 497 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 PRLP01236 227 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 IQCF3P0C7M6 154 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 INCA1Q0VD86 236 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 HOXB13Q92826 284 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 ZNF382Q96SR6 550 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 TREX2Q9BQ50 279 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 SOX17Q9H6I2 414 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 SUSD2Q9UGT4 822 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 FAAHO00519 579 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 MSL3P1P0C860 447 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 PORP16435 677 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 TUBA1BP68363 451 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 TUBA4AP68366 448 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 PITX1P78337 314 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 VMACQ2NL98 169 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 C18orf21Q32NC0 220 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 TUBA1AQ71U36 451 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 POPDC3Q9HBV1 291 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 SH3BGRL2Q9UJC5 107 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 AFDNP55196 1824 aaKnown RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 A0A1B0GV50 99 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 YY2O15391 372 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 HNRNPA1P09651 372 aaKnown RBP eCLIP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 RIDAP52758 137 aaKnown RBP14.72□□□□□ -0.05
PTPRF-206ENST00000429895 TUBA3CQ13748 450 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 NPY5RQ15761 445 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 OR5L2Q8NGL0 311 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 C16orf58Q96GQ5 468 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 OR2S2Q9NQN1 319 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 ZNF175Q9Y473 711 aa14.72□□□□□ -0.05
PTPRF-206ENST00000429895 HSD3B1P14060 373 aa14.71□□□□□ -0.05
PTPRF-206ENST00000429895 DNAJB13P59910 316 aa14.71□□□□□ -0.05
PTPRF-206ENST00000429895 KIAA0319Q5VV43 1072 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms