RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 HCN1O60741 890 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 EEDO75530 441 aaKnown RBP13.36□□□□□ -0.27
SDC1-204ENST00000429035 C1QAP02745 245 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 GBAP04062 536 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 IGKV3-11P04433 115 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 RFPL3SP0C7P2 107 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 MAGEA4P43358 317 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 E2F2Q14209 437 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 SETDB1Q15047 1291 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 EBPQ15125 230 aaKnown RBP13.36□□□□□ -0.27
SDC1-204ENST00000429035 ZNF791Q3KP31 576 aaPredicted RBP13.36□□□□□ -0.27
SDC1-204ENST00000429035 C6orf163Q5TEZ5 329 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 MROH9Q5TGP6 573 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 LYPD8Q6UX82 237 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 SPNS3Q6ZMD2 512 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 LIX1LQ8IVB5 337 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 ST13P4Q8IZP2 240 aaPredicted RBP13.36□□□□□ -0.27
SDC1-204ENST00000429035 ZCCHC7Q8N3Z6 543 aaKnown RBP13.36□□□□□ -0.27
SDC1-204ENST00000429035 MYRIPQ8NFW9 859 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 FBXO25Q8TCJ0 367 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 PAQR8Q8TEZ7 354 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 ANP32BQ92688 251 aaKnown RBP13.36□□□□□ -0.27
SDC1-204ENST00000429035 RIT1Q92963 219 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 REPS1Q96D71 796 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 RAB17Q9H0T7 212 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 ZFP64Q9NPA5 681 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 ACOT9Q9Y305 439 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 PCDHGA11Q9Y5H2 935 aa13.36□□□□□ -0.27
SDC1-204ENST00000429035 A0A087X1B8 175 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 LRRC3CA6NJW4 275 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 WASHC1A8K0Z3 465 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 FAM47E-STBD1D6RA91 191 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 TMPRSS11DO60235 418 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 AIFM1O95831 613 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 FBXO45P0C2W1 286 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 GABRA1P14867 456 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 CD1EP15812 388 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 SERPINB3P29508 390 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 UQCRC1P31930 480 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 PIK3CBP42338 1070 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 MASP1P48740 699 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 NAB1Q13506 487 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 GTF2H2Q13888 395 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 TOMM20Q15388 145 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 FAM83EQ2M2I3 478 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 HYAL4Q2M3T9 481 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 SPRED3Q2MJR0 410 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 SLC25A35Q3KQZ1 300 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 LIPJQ5W064 366 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 HLA-DQA1Q5Y7H0 255 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 GTF2H2CQ6P1K8 395 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 KLC3Q6P597 504 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 ADGRD1Q6QNK2 874 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 TMEM64Q6YI46 380 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 GOLGA7Q7Z5G4 137 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 NUDT13Q86X67 352 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 CENPLQ8N0S6 344 aaPredicted RBP13.35□□□□□ -0.27
SDC1-204ENST00000429035 TAGAPQ8N103 731 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 SLC15A4Q8N697 577 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 DIO2Q92813 273 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 GPATCH1Q9BRR8 931 aaKnown RBP13.35□□□□□ -0.27
SDC1-204ENST00000429035 SLC24A3Q9HC58 644 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 SNX15Q9NRS6 342 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 DNAJB12Q9NXW2 375 aaKnown RBP13.35□□□□□ -0.27
SDC1-204ENST00000429035 L3MBTL1Q9Y468 752 aa13.35□□□□□ -0.27
SDC1-204ENST00000429035 A0A0A6YYD5 115 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 TRAPPC6AO75865 159 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 SIX3O95343 332 aaPredicted RBP13.34□□□□□ -0.27
SDC1-204ENST00000429035 GPR75O95800 540 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 FAM58BPP0C7Q3 252 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 MTHFD2P13995 350 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 SSTR4P31391 388 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 NEK2P51955 445 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 DLX5P56178 289 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 WNT3P56703 355 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 CAV1Q03135 178 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 TBL3Q12788 808 aaKnown RBP13.34□□□□□ -0.27
SDC1-204ENST00000429035 CBLBQ13191 982 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 BIKQ13323 160 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 RIPPLY2Q5TAB7 128 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 TMEM198Q66K66 360 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 OR52E8Q6IFG1 317 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 CYS1Q717R9 158 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 ULK2Q8IYT8 1036 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 DND1Q8IYX4 353 aaKnown RBP13.34□□□□□ -0.27
SDC1-204ENST00000429035 PRR22Q8IZ63 422 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 NEIL3Q8TAT5 605 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 UCN3Q969E3 161 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 ATP6V1E2Q96A05 226 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 CDK15Q96Q40 435 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 VPS11Q9H270 941 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 SH2D2AQ9NP31 389 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 CNIH4Q9P003 139 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 CNOT11Q9UKZ1 510 aaKnown RBP13.34□□□□□ -0.27
SDC1-204ENST00000429035 CHCHD2Q9Y6H1 151 aaPredicted RBP13.34□□□□□ -0.27
SDC1-204ENST00000429035 KIAA1549Q9HCM3 1950 aa13.34□□□□□ -0.27
SDC1-204ENST00000429035 A0A096LPK6 155 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 C2orf92A0A1B0GVN3 265 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 A0A1W2PR48 441 aa13.33□□□□□ -0.28
SDC1-204ENST00000429035 A0A1W2PS29 197 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms