RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 OR14I1A6ND48 311 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 SYNDIG1LA6NDD5 238 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 KLK8O60259 260 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 GPR75O95800 540 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 CT62P0C5K7 136 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 FAM58BPP0C7Q3 252 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 NR2F6P10588 404 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 SERPINB1P30740 379 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 TLX1P31314 330 aaPredicted RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 CASQ1P31415 396 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 ARL1P40616 181 aaPredicted RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 PIK3CBP42338 1070 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 ZFP36L2P47974 494 aaKnown RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 SLC37A1P57057 533 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 FBXW4P57775 412 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 GUCY2DQ02846 1103 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 GTF2H2Q13888 395 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 EBPQ15125 230 aaKnown RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 WLSQ5T9L3 541 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 MRM1Q6IN84 353 aaKnown RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 GTF2H2CQ6P1K8 395 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 CYP20A1Q6UW02 462 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 SYT10Q6XYQ8 523 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 RNF111Q6ZNA4 994 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 SLC29A4Q7RTT9 530 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 PRR22Q8IZ63 422 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 ST13P4Q8IZP2 240 aaPredicted RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 PLD6Q8N2A8 252 aaKnown RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 ZCCHC7Q8N3Z6 543 aaKnown RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 RIT1Q92963 219 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 NSUN5Q96P11 429 aaKnown RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 GPR78Q96P69 363 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 VPS11Q9H270 941 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 ZNF703Q9H7S9 590 aaPredicted RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 IPPKQ9H8X2 491 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 ZFP64Q9NPA5 681 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 TEX10Q9NXF1 929 aaPredicted RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 CNOT11Q9UKZ1 510 aaKnown RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 CHCHD2Q9Y6H1 151 aaPredicted RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 ANKRD17O75179 2603 aaKnown RBP10.64□□□□□ -0.71
USP4-204ENST00000416417 A0A087X1B8 175 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 A0A096LPK6 155 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 SYCE1LA8MT33 242 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 OR7A17O14581 309 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 DYRK3O43781 588 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 SUSD5O60279 629 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 FBXO45P0C2W1 286 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 PTX3P26022 381 aaPredicted RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 BUD31P41223 144 aaPredicted RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 PCDH1Q08174 1060 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 FAM83EQ2M2I3 478 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 HYAL4Q2M3T9 481 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 SGO1Q5FBB7 561 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 LIPJQ5W064 366 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 DESI1Q6ICB0 168 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 SEM1Q6ZVN7 128 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 ZZZ3Q8IYH5 903 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 MMP21Q8N119 569 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 FBXW8Q8N3Y1 598 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 PTGR2Q8N8N7 351 aaPredicted RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 OR52B6Q8NGF0 335 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 WDR20Q8TBZ3 569 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 SARAFQ96BY9 339 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 PHF21BQ96EK2 531 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 CENPKQ9BS16 269 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 DOHHQ9BU89 302 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 LIME1Q9H400 295 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 NOL11Q9H8H0 719 aaKnown RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 MS4A12Q9NXJ0 267 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 ADGRE2Q9UHX3 823 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 PCDHGA11Q9Y5H2 935 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 H0YIV9 168 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 DIAPH2O60879 1101 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 ACSL3O95573 720 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 ALDOAP04075 364 aaKnown RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 TSPAN8P19075 237 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 GDF1P27539 372 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 ART1P52961 327 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 ALDH18A1P54886 795 aaKnown RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 CAV1Q03135 178 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 NNATQ16517 81 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 ULK2Q8IYT8 1036 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 LRRC25Q8N386 305 aaPredicted RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 RHEBL1Q8TAI7 183 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 DIO2Q92813 273 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 ART5Q96L15 291 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 MRPL1Q9BYD6 325 aaKnown RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 RAB17Q9H0T7 212 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 DDX31Q9H8H2 851 aaKnown RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 LYARQ9NX58 379 aaKnown RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 BOKQ9UMX3 212 aaPredicted RBP10.63□□□□□ -0.71
USP4-204ENST00000416417 SLC6A5Q9Y345 797 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 L3MBTL1Q9Y468 752 aa10.63□□□□□ -0.71
USP4-204ENST00000416417 PHF3Q92576 2039 aaKnown RBP10.62□□□□□ -0.71
USP4-204ENST00000416417 C15orf38-AP3S2A0A0A6YYH1 394 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 A0A1B0GTL3 188 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 C2orf92A0A1B0GVN3 265 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 C2orf72A6NCS6 295 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 FOXO6A8MYZ6 492 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 HCN1O60741 890 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms