RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SEC22BO75396 215 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 B3GALT4O96024 378 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 RRADP55042 308 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 AQP5P55064 265 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 MYBPC3Q14896 1274 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 BROXQ5VW32 411 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 FAM199XQ6PEV8 388 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 DGAT2L6Q6ZPD8 337 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 ACAD11Q709F0 780 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 TMEM151BQ8IW70 566 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 METTL25Q8N6Q8 603 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 PPP1R14CQ8TAE6 165 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 ZCCHC10Q8TBK6 192 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 N4BP2L2Q92802 583 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 COL26A1Q96A83 441 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 PEX11GQ96HA9 241 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 SPATA9Q9BWV2 254 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 TMEM120AQ9BXJ8 343 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 PAIP1Q9H074 479 aaKnown RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 GPN2Q9H9Y4 310 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-202ENST00000394943 POLE3Q9NRF9 147 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 ATAD3AQ9NVI7 634 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 HCN3Q9P1Z3 774 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 C3orf18Q9UK00 162 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 ADAM21Q9UKJ8 722 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 TRIM33Q9UPN9 1127 aa6.54□□□□□ -1.36
LIMA1-202ENST00000394943 CFAP54Q96N23 3096 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 FAM227AF5H4B4 570 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 ETV2O00321 342 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 B4GALT2O60909 372 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 NKX2-2O95096 273 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 EMDP50402 254 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 DIO3P55073 304 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 MLF1P58340 268 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 RPL38P63173 70 aaKnown RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 BTG2P78543 158 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 DCAF10Q5QP82 559 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 MTFMTQ96DP5 389 aaKnown RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 NEURL3Q96EH8 262 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 VMP1Q96GC9 406 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 SYNDIG1Q9H7V2 258 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 GPATCH2Q9NW75 528 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 MAP10Q9P2G4 905 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 TRPC4Q9UBN4 977 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 PSME2Q9UL46 239 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 POLHQ9Y253 713 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 AKAP13Q12802 2813 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 A0A096LPI6 279 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 FRG2CA6NGY1 282 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 ERVH48-1M5A8F1 160 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 UBDO15205 165 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 RRP8O43159 456 aaKnown RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 HEXBP07686 556 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 TROVE2P10155 538 aaKnown RBP eCLIP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 RPS4Y1P22090 263 aaKnown RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 PLIN5Q00G26 463 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 TBR1Q16650 682 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 IMPG1Q17R60 797 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 C1orf189Q5VU69 101 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 DLEU7Q6UYE1 221 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 SLC35B4Q969S0 331 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 ELP4Q96EB1 424 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 SLC35A4Q96G79 324 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 MESP1Q9BRJ9 268 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 EVA1AQ9H8M9 152 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 FGFR1OP2Q9NVK5 253 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 POLR3HQ9Y535 204 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 AK5Q9Y6K8 562 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 CCDC88CQ9P219 2028 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 A0A1W2PP18 115 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 NPIPB9F8W1W9 429 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 EIF2S1P05198 315 aaKnown RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 EPHA3P29320 983 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 EEF1A2Q05639 463 aaKnown RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 ZNF791Q3KP31 576 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 GALNTL6Q49A17 601 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 VWA5B1Q5TIE3 1220 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 SPATA21Q7Z572 469 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 ZNF227Q86WZ6 799 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 CALHM3Q86XJ0 350 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 MIER2Q8N344 545 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 FNDC5Q8NAU1 212 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 MDS2Q8NDY4 140 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 GTF2H4Q92759 462 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 DAZLQ92904 295 aaKnown RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 HGDQ93099 445 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 TUBGCP3Q96CW5 907 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 HSPBAP1Q96EW2 488 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 EGLN2Q96KS0 407 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 CRB3Q9BUF7 120 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 ALOXE3Q9BYJ1 711 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 HHATLQ9HCP6 504 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 P4HTMQ9NXG6 502 aa6.53□□□□□ -1.36
LIMA1-202ENST00000394943 GPR55Q9Y2T6 319 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 PTRH2Q9Y3E5 179 aaKnown RBP6.53□□□□□ -1.36
LIMA1-202ENST00000394943 PRSS51A0A1B0GVH4 220 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 E9PBE3 544 aa6.52□□□□□ -1.37
LIMA1-202ENST00000394943 SLC22A3O75751 556 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms