RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 DMC1Q14565 340 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 LEXMQ3ZCV2 418 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 SBSNQ6UWP8 590 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 TRIM69Q86WT6 500 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 PIANPQ8IYJ0 282 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 CAMKK1Q8N5S9 505 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 CLDN22Q8N7P3 220 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 USP7Q93009 1102 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 TESCQ96BS2 214 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 DIRAS2Q96HU8 199 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 SPNS1Q9H2V7 528 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 SH3BP4Q9P0V3 963 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 PADI2Q9Y2J8 665 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 OARD1Q9Y530 152 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 PIAS3Q9Y6X2 628 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 NCOR1O75376 2440 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 COL4A2P08572 1712 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 HYKKA2RU49 373 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 WASHC1A8K0Z3 465 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 I3L521 148 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 EGFP01133 1207 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 IL1AP01583 271 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 HOXB1P14653 301 aaPredicted RBP10.59□□□□□ -0.71
CUX1-204ENST00000393824 ACPPP15309 386 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 ZNF250P15622 560 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 PIK3CGP48736 1102 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 RPS14P62263 151 aaKnown RBP10.59□□□□□ -0.71
CUX1-204ENST00000393824 KCNJ10P78508 379 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 HKDC1Q2TB90 917 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 C2orf27AQ580R0 203 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 ARSIQ5FYB1 569 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 C9orf64Q5T6V5 341 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 PSAPL1Q6NUJ1 521 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 CERS6Q6ZMG9 384 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 TSPAN33Q86UF1 283 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 PTOV1Q86YD1 416 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 RGL4Q8IZJ4 473 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 C1orf52Q8N6N3 182 aaKnown RBP10.59□□□□□ -0.71
CUX1-204ENST00000393824 ZNF680Q8NEM1 530 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 ULK4Q96C45 1275 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 QRFPRQ96P65 431 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 HHIPQ96QV1 700 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 TMEM184CQ9NVA4 438 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 MCUBQ9NWR8 336 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 ATP6V1HQ9UI12 483 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 STUB1Q9UNE7 303 aa10.59□□□□□ -0.71
CUX1-204ENST00000393824 LSM2Q9Y333 95 aaKnown RBP10.59□□□□□ -0.71
CUX1-204ENST00000393824 A0A1W2PQL4 384 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 MANBAO00462 879 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 RFXANKO14593 260 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 OR1I1O60431 355 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 IGSF6O95976 241 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 TSPAN19P0C672 248 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 RPS3P23396 243 aaKnown RBP eCLIP10.58□□□□□ -0.721e-7■■■■□ 20.3
CUX1-204ENST00000393824 PTX3P26022 381 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 KIR2DL1P43626 348 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 RGS4P49798 205 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 ETV1P50549 477 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 AP1S1P61966 158 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 COX10Q12887 443 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 RIN1Q13671 783 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 C18orf21Q32NC0 220 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 FNDC3BQ53EP0 1204 aaKnown RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 MZT2BQ6NZ67 158 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 RFLNAQ6ZTI6 216 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 GALNT10Q86SR1 603 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 ANKRD46Q86W74 232 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 GPALPP1Q8IXQ4 340 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 SLC5A8Q8N695 610 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 CLHC1Q8NHS4 586 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 WDR36Q8NI36 951 aaKnown RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 P2RY13Q9BPV8 354 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 ADGRE3Q9BY15 652 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 FAM126AQ9BYI3 521 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 CD244Q9BZW8 370 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 IMPAD1Q9NX62 359 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 DUSP12Q9UNI6 340 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 NPIPB15A6NHN6 443 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 NPIPB8E9PQR5 432 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 CLIC1O00299 241 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 ADAMDEC1O15204 470 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 TAPBPO15533 448 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 MPZL2O60487 215 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 ARSBP15848 533 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 PRPH2P23942 346 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 MAPK1P28482 360 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 CDKN1CP49918 316 aaPredicted RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 SNRPD1P62314 119 aaKnown RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 BCL2L1Q07817 233 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 RIPPLY1Q0D2K3 151 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 MRPL28Q13084 256 aaKnown RBP10.58□□□□□ -0.72
CUX1-204ENST00000393824 PYDC2Q56P42 97 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 IGSF11Q5DX21 431 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 ZRANB3Q5FWF4 1079 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 KIAA1211LQ6NV74 962 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 SERPINA13PQ6UXR4 307 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 GPR155Q7Z3F1 870 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 PRSS42Q7Z5A4 293 aa10.58□□□□□ -0.72
CUX1-204ENST00000393824 SAMD14Q8IZD0 417 aaPredicted RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms