RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 NMNAT2Q9BZQ4 307 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 DDX4Q9NQI0 724 aaKnown RBP8.41□□□□□ -1.06
LIG3-202ENST00000378526 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.41□□□□□ -1.06
LIG3-202ENST00000378526 CHD2O14647 1828 aaKnown RBP8.41□□□□□ -1.06
LIG3-202ENST00000378526 A0A1W2PQ67 120 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 ANKRD34BA5PLL1 514 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 MEGF11A6BM72 1044 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 CREG1O75629 220 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 TMEM63AO94886 807 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 EGFP01133 1207 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 CDK5Q00535 292 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 CST9LP1Q5W188 147 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 WDR74Q6RFH5 385 aaPredicted RBP8.41□□□□□ -1.06
LIG3-202ENST00000378526 SLC44A5Q8NCS7 719 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 GPR151Q8TDV0 419 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 TMEM169Q96HH4 297 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 ZDHHC5Q9C0B5 715 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 ITM2CQ9NQX7 267 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 KLHL21Q9UJP4 597 aa8.41□□□□□ -1.06
LIG3-202ENST00000378526 ALPIP09923 528 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 OR5H8P0DN80 308 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 ADORA2AP29274 412 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 ZNF266Q14584 549 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 TMEM86AQ8N2M4 240 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 MFSD9Q8NBP5 474 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 OR52E4Q8NGH9 312 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 PYCR2Q96C36 320 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 FAM173AQ9BQD7 235 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 PKIBQ9C010 78 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 SAP130Q9H0E3 1048 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 EIF2B3Q9NR50 452 aaKnown RBP8.4□□□□□ -1.06
LIG3-202ENST00000378526 LSM5Q9Y4Y9 91 aaKnown RBP8.4□□□□□ -1.06
LIG3-202ENST00000378526 ARL2-SNX15V9GYD0 113 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 FAM166BA8MTA8 275 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 GSG1L2A8MUP6 293 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 GAPDHSO14556 408 aaPredicted RBP8.4□□□□□ -1.06
LIG3-202ENST00000378526 TCAPO15273 167 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 POMCP01189 267 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 GGT1P19440 569 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 THBS2P35442 1172 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 PROX2Q3B8N5 592 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 STEAP3Q658P3 488 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 UNQ6126/PRO20091Q6UXV3 157 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 ZNF783Q6ZMS7 281 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 DENND1AQ8TEH3 1009 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 SORCS1Q8WY21 1168 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 PKP4Q99569 1192 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 BRF2Q9HAW0 419 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 KANSL3Q9P2N6 904 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 FZD4Q9ULV1 537 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 MRPS23Q9Y3D9 190 aaKnown RBP8.4□□□□□ -1.06
LIG3-202ENST00000378526 PCDHB14Q9Y5E9 798 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 TRBV2A0A0J9YWF9 115 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 TBL1XO60907 577 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 CA5AP35218 305 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 PBX3P40426 434 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 ZNF154Q13106 437 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 TMEM97Q5BJF2 176 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 C10orf62Q5T681 223 aaPredicted RBP8.4□□□□□ -1.06
LIG3-202ENST00000378526 FOXR2Q6PJQ5 311 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 SLC38A6Q8IZM9 456 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 TMEM151AQ8N4L1 468 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 ZMIZ2Q8NF64 920 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 ZNRF4Q8WWF5 429 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 ST8SIA4Q92187 359 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 CYP2S1Q96SQ9 504 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 RANGRFQ9HD47 186 aaPredicted RBP8.4□□□□□ -1.06
LIG3-202ENST00000378526 SLC35D1Q9NTN3 355 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 TNRQ92752 1358 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 LOC102724200A0A096LPH7 203 aaPredicted RBP8.4□□□□□ -1.06
LIG3-202ENST00000378526 H3BMQ9 156 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 FSCN2O14926 492 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 TSPAN3O60637 253 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 CST2P09228 141 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 PSMB3P49720 205 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 PLA2G16P53816 162 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 TCTAP57738 103 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 IRF4Q15306 451 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 DUOXA1Q1HG43 343 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 UBE2NLQ5JXB2 153 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 ENTHD1Q8IYW4 607 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 OR4D6Q8NGJ1 314 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 OR13C5Q8NGS8 318 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 LMX1AQ8TE12 382 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 THAP7Q9BT49 309 aaPredicted RBP8.4□□□□□ -1.06
LIG3-202ENST00000378526 OR51I1Q9H343 314 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 GMEB2Q9UKD1 530 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 SLC22A14Q9Y267 594 aa8.4□□□□□ -1.06
LIG3-202ENST00000378526 FANCAO15360 1455 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 ATP10AO60312 1499 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 H0YGN5 161 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 SCDO00767 359 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 ADH5P11766 374 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 ATP4BP51164 291 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 TPPP2P59282 170 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 PFKPQ01813 784 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 SNTB1Q13884 538 aaKnown RBP8.4□□□□□ -1.07
LIG3-202ENST00000378526 CNIH2Q6PI25 160 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 SLC35D2Q76EJ3 337 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 ASRGL1Q7L266 308 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms