RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 IRS1P35568 1242 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 SLC9A3P48764 834 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 POLR2LP62875 67 aaKnown RBP15.54■□□□□ 0.08
SDC4-201ENST00000372733 PIN1Q13526 163 aaPredicted RBP15.54■□□□□ 0.08
SDC4-201ENST00000372733 EFR3AQ14156 821 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 ZNF284Q2VY69 593 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 FAM92BQ6ZTR7 304 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 SLC30A8Q8IWU4 369 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 NLGN4YQ8NFZ3 816 aaPredicted RBP15.54■□□□□ 0.08
SDC4-201ENST00000372733 TM9SF4Q92544 642 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 GLYATL1Q969I3 302 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 LRR1Q96L50 414 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 RIPOR3Q96MK2 946 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 TM9SF2Q99805 663 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 KATNB1Q9BVA0 655 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 DIMT1Q9UNQ2 313 aaKnown RBP15.54■□□□□ 0.08
SDC4-201ENST00000372733 ANHXE9PGG2 379 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 RTCAO00442 366 aaKnown RBP15.54■□□□□ 0.08
SDC4-201ENST00000372733 B4GALT2O60909 372 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 CYP2A6P11509 494 aaPredicted RBP15.54■□□□□ 0.08
SDC4-201ENST00000372733 CPEP16870 476 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 APEX1P27695 318 aaKnown RBP15.54■□□□□ 0.08
SDC4-201ENST00000372733 GNG2P59768 71 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 OCLNQ16625 522 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 OLIG3Q7RTU3 272 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 HMGN2P46Q86SG4 172 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 PDZD3Q86UT5 571 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 MEX3DQ86XN8 651 aaKnown RBP15.54■□□□□ 0.08
SDC4-201ENST00000372733 OR52P1PQ8NH57 321 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 C1GALT1C1Q96EU7 318 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 SCLYQ96I15 445 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 ZSCAN5AQ9BUG6 496 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 TMEM245Q9H330 911 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 MTG2Q9H4K7 406 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 RRAGCQ9HB90 399 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 A4GALTQ9NPC4 353 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 ACOXLQ9NUZ1 547 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 RNF186Q9NXI6 227 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 DNMT3AQ9Y6K1 912 aaPredicted RBP15.54■□□□□ 0.08
SDC4-201ENST00000372733 FAM25AB3EWG3 89 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 FAM25CB3EWG5 89 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 FAM25GB3EWG6 89 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 M0R3H8 397 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 NME6O75414 186 aaPredicted RBP15.53■□□□□ 0.08
SDC4-201ENST00000372733 SOD2P04179 222 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 CCNYL3P0C7X3 344 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 GPLD1P80108 840 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 TMEM115Q12893 351 aaPredicted RBP15.53■□□□□ 0.08
SDC4-201ENST00000372733 HSPB3Q12988 150 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 FAM209AQ5JX71 171 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 SYCE2Q6PIF2 218 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 C2orf73Q8N5S3 287 aaPredicted RBP15.53■□□□□ 0.08
SDC4-201ENST00000372733 YIPF7Q8N8F6 280 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 ZFP41Q8N8Y5 198 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 SLC43A3Q8NBI5 491 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 SLC5A11Q8WWX8 675 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 MRPS31Q92665 395 aaKnown RBP15.53■□□□□ 0.08
SDC4-201ENST00000372733 TIFAQ96CG3 184 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 MTERF3Q96E29 417 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 NEURL3Q96EH8 262 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 WDR34Q96EX3 536 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 DHRS1Q96LJ7 313 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 KCTD7Q96MP8 289 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 ZNF582Q96NG8 517 aaPredicted RBP15.53■□□□□ 0.08
SDC4-201ENST00000372733 PLXND1Q9Y4D7 1925 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 A0A0G2JMP0 313 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 GRM6O15303 877 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 LEFTY1O75610 366 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 MAN2A2P49641 1150 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 GINS1Q14691 196 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 TATDN3Q17R31 274 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 HIST2H2AA3Q6FI13 130 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 ACSM5Q6NUN0 579 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 UNC5DQ6UXZ4 953 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 LAPTM4BQ86VI4 370 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 FAM83CQ9BQN1 747 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 SGPP1Q9BX95 441 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 ANKRA2Q9H9E1 313 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 COMMD3Q9UBI1 195 aa15.53■□□□□ 0.08
SDC4-201ENST00000372733 LAMA3Q16787 3333 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 TRAV19A0A0A6YYK7 116 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 LEFTY2O00292 366 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 QSOX1O00391 747 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 SEC14L5O43304 696 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 CD79BP40259 229 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 MAP2K3P46734 347 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 TLE2Q04725 743 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 CRTC2Q53ET0 693 aaPredicted RBP15.52■□□□□ 0.08
SDC4-201ENST00000372733 SPOUT1Q5T280 376 aaKnown RBP15.52■□□□□ 0.08
SDC4-201ENST00000372733 LCN1P1Q5VSP4 162 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 RNLSQ5VYX0 342 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 PODNL1Q6PEZ8 512 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 BRAT1Q6PJG6 821 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 NXPE4Q6UWF7 544 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 SHFQ7M4L6 423 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 C11orf74Q86VG3 221 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 TMEM25Q86YD3 366 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 ADGRF3Q8IZF5 1079 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 GRPEL2Q8TAA5 225 aa15.52■□□□□ 0.08
SDC4-201ENST00000372733 GATAD2BQ8WXI9 593 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms