RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 UBTFL6P0CB48 400 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-202ENST00000372405 GNSP15586 552 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 MPIP34949 423 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 MC3RP41968 323 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 ARRB1P49407 418 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-202ENST00000372405 SELENOWP63302 87 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 SHC2P98077 582 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 PDK3Q15120 406 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 RPS26P11Q5JNZ5 115 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-202ENST00000372405 ANKRD34AQ69YU3 496 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 SZRD1Q7Z422 152 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 GATAD2AQ86YP4 633 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 CHERPQ8IWX8 916 aaKnown RBP12.97□□□□□ -0.33
PTPRF-202ENST00000372405 SFXN5Q8TD22 340 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 KAT2AQ92830 837 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 ELP4Q96EB1 424 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 OTUB1Q96FW1 271 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-202ENST00000372405 SLC35G5Q96KT7 338 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 DOHHQ9BU89 302 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 OR51I1Q9H343 314 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 SEMA3GQ9NS98 782 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 MS4A12Q9NXJ0 267 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 TMEM9Q9P0T7 183 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 PSME2Q9UL46 239 aa12.97□□□□□ -0.33
PTPRF-202ENST00000372405 NINQ8N4C6 2090 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 PLOD2O00469 737 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 FOXS1O43638 330 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 SRPX2O60687 465 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-202ENST00000372405 NME6O75414 186 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-202ENST00000372405 HMGN2P05204 90 aaKnown RBP12.96□□□□□ -0.33
PTPRF-202ENST00000372405 BCHEP06276 602 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 OR12D1P0DN82 309 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 GLB1P16278 677 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 HOXB6P17509 224 aaKnown RBP12.96□□□□□ -0.33
PTPRF-202ENST00000372405 TNFRSF1BP20333 461 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 EPHA8P29322 1005 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-202ENST00000372405 CSF2RBP32927 897 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 XKP51811 444 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 PRKAG1P54619 331 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 ID2Q02363 134 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 NR1D2Q14995 579 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 OTUD3Q5T2D3 398 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-202ENST00000372405 REEP3Q6NUK4 255 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 UGT2A3Q6UWM9 527 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 FKBP9P1Q75LS8 142 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 SIMC1Q8NDZ2 872 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 OR4K14Q8NGD5 310 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 MAGEE2Q8TD90 523 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-202ENST00000372405 PIGKQ92643 395 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 C16orf58Q96GQ5 468 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 TMEM19Q96HH6 336 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 OSBPL11Q9BXB4 747 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 PRDM9Q9NQV7 894 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 GIMAP4Q9NUV9 329 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 ADPRHL2Q9NX46 363 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 ANGPT4Q9Y264 503 aa12.96□□□□□ -0.33
PTPRF-202ENST00000372405 WDR87Q6ZQQ6 2873 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 MYOCOSA0A1B0GUC4 107 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 FGF17O60258 216 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 LDB3O75112 727 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 RECKO95980 971 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 FABP3P05413 133 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 FHP07954 510 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 TLX1P31314 330 aaPredicted RBP12.96□□□□□ -0.34
PTPRF-202ENST00000372405 DCTP40126 519 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 MLLT3P42568 568 aaPredicted RBP12.96□□□□□ -0.34
PTPRF-202ENST00000372405 PPM1FP49593 454 aaPredicted RBP12.96□□□□□ -0.34
PTPRF-202ENST00000372405 MRPS35P82673 323 aaKnown RBP12.96□□□□□ -0.34
PTPRF-202ENST00000372405 FUT5Q11128 374 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 KCNAB1Q14722 419 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 LASP1Q14847 261 aaKnown RBP12.96□□□□□ -0.34
PTPRF-202ENST00000372405 SYPL1Q16563 259 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 USP53Q70EK8 1073 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 PIWIL3Q7Z3Z3 882 aaKnown RBP12.96□□□□□ -0.34
PTPRF-202ENST00000372405 LRRC25Q8N386 305 aaPredicted RBP12.96□□□□□ -0.34
PTPRF-202ENST00000372405 Q8N9G6 341 aaPredicted RBP12.96□□□□□ -0.34
PTPRF-202ENST00000372405 OR7G2Q8NG99 324 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 TFAP2CQ92754 450 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 GIMAP5Q96F15 307 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 ZDHHC12Q96GR4 267 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 CNBD2Q96M20 576 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 BARD1Q99728 777 aaKnown RBP12.96□□□□□ -0.34
PTPRF-202ENST00000372405 YIPF4Q9BSR8 244 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 CHRNA10Q9GZZ6 450 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 U3KQV3 271 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 ADAMTS20P59510 1910 aa12.96□□□□□ -0.34
PTPRF-202ENST00000372405 A0A0A6YYC8 382 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-202ENST00000372405 LY6G6EA0A0G2JKS1 128 aa12.95□□□□□ -0.34
PTPRF-202ENST00000372405 A0A1B0GTQ1 180 aa12.95□□□□□ -0.34
PTPRF-202ENST00000372405 G3V2T6 193 aa12.95□□□□□ -0.34
PTPRF-202ENST00000372405 I3L1I5 382 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-202ENST00000372405 PGM3O95394 542 aa12.95□□□□□ -0.34
PTPRF-202ENST00000372405 ALPLP05186 524 aa12.95□□□□□ -0.34
PTPRF-202ENST00000372405 LYNP07948 512 aa12.95□□□□□ -0.34
PTPRF-202ENST00000372405 CPMP14384 443 aa12.95□□□□□ -0.34
PTPRF-202ENST00000372405 MATN1P21941 496 aa12.95□□□□□ -0.34
PTPRF-202ENST00000372405 CD1CP29017 333 aa12.95□□□□□ -0.34
PTPRF-202ENST00000372405 CLCN2P51788 898 aa12.95□□□□□ -0.34
PTPRF-202ENST00000372405 ARSFP54793 590 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms