RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 K7EQS6 105 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 AIREO43918 545 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 ADAP00813 363 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 ELAVL4P26378 380 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 GPC1P35052 558 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 IGFALSP35858 605 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 KIR2DL1P43626 348 aaPredicted RBP19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 PSMD7P51665 324 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 DGKEP52429 567 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 UAP1L1Q3KQV9 507 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 LEXMQ3ZCV2 418 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 PARM1Q6UWI2 310 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 SZRD1Q7Z422 152 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 TRIM73Q86UV7 250 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 MFSD4AQ8N468 514 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 FGF14Q92915 247 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 MS4A6EQ96DS6 147 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 SLC35G5Q96KT7 338 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 MVB12BQ9H7P6 319 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 PRDM8Q9NQV8 689 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 P2RX2Q9UBL9 471 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 SEC14L3Q9UDX4 400 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 REV3LO60673 3130 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 HAT1O14929 419 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 PTHP01270 115 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 ADORA3P0DMS8 318 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 POU1F1P28069 291 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 CLK1P49759 484 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 SLAMF1Q13291 335 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 SLC9A5Q14940 896 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 DEF8Q6ZN54 512 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 PTCHD4Q6ZW05 846 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 SLC46A3Q7Z3Q1 461 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 ZNF554Q86TJ5 538 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 LACC1Q8IV20 430 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 RASSF5Q8WWW0 418 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 FAIM2Q9BWQ8 316 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 UCK2Q9BZX2 261 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 PRDM7Q9NQW5 492 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 DNAAF2Q9NVR5 837 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 ASB4Q9Y574 426 aa19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 GPC6Q9Y625 555 aaPredicted RBP19.7■□□□□ 0.74
CCDC88B-203ENST00000359902 SH3D21A4FU49 640 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 TMEM247A6NEH6 219 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 PDZK1P1A8MUH7 402 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 CACNB4O00305 520 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 PLRG1O43660 514 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 MPZL2O60487 215 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 SERPINB7O75635 380 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 H1F0P07305 194 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 GADD45AP24522 165 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 PBX2P40425 430 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 NCBP2P52298 156 aaKnown RBP eCLIP19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 DCST1Q5T197 706 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 SYCE2Q6PIF2 218 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 FBXL6Q8N531 539 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 OR8K5Q8NH50 307 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 SLC6A17Q9H1V8 727 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 DCSTAMPQ9H295 470 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 FZD3Q9NPG1 666 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 ZCCHC3Q9NUD5 404 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 ZSCAN32Q9NX65 697 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 TRPC4Q9UBN4 977 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 ACAD8Q9UKU7 415 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 ATG2BQ96BY7 2078 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 A0A1W2PR48 441 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 SCAMP1O15126 338 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 PGRMC2O15173 223 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 ERI3O43414 337 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 KCNJ13O60928 360 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 RNGTTO60942 597 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 NR2F1P10589 423 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 BMP4P12644 408 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 OSMP13725 252 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 PEBP1P30086 187 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 UGT2B10P36537 528 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 RPE65Q16518 533 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 ABHD17CQ6PCB6 329 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 COMTD1Q86VU5 262 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 RBM12BQ8IXT5 1001 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D19Q8N5T2 526 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 OR2L3Q8NG85 312 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 BBS4Q96RK4 519 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 FUZQ9BT04 418 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 APOOQ9BUR5 198 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 ZBTB20Q9HC78 741 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 SEMA3GQ9NS98 782 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 SPHK1Q9NYA1 384 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 MGAT4BQ9UQ53 548 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 ATG4BQ9Y4P1 393 aa19.69■□□□□ 0.74
CCDC88B-203ENST00000359902 OXSR1O95747 527 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 ADRA2AP08913 450 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 HIST1H1TP22492 207 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 MAT2AP31153 395 aaKnown RBP19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 PTGER1P34995 402 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 ABATP80404 500 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 ILKQ13418 452 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 GPR19Q15760 415 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 FBXO43Q4G163 708 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 MRM1Q6IN84 353 aaKnown RBP19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms