RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 P2RX2Q9UBL9 471 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 PLEKHM1Q9Y4G2 1056 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 LOC100506127A0A0U1RQW1 187 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 SH3D21A4FU49 640 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 GLOD5A6NK44 160 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 OR10H3O60404 316 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 SOX14O95416 240 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 MLC1Q15049 377 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 DUSP6Q16828 381 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 C2orf27AQ580R0 203 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 LACC1Q8IV20 430 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 FAM46DQ8NEK8 389 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 XAGE5Q8WWM1 108 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 RASSF5Q8WWW0 418 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 AMDHD1Q96NU7 426 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 UCK2Q9BZX2 261 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 KLHL31Q9H511 634 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 TRPC4Q9UBN4 977 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 REV1Q9UBZ9 1251 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 EFCAB10A6NFE3 127 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 OR52A4PA6NMU1 304 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 CNOT3O75175 753 aaKnown RBP20.62■□□□□ 0.89
SHMT1-202ENST00000352886 H1F0P07305 194 aaKnown RBP20.62■□□□□ 0.89
SHMT1-202ENST00000352886 ADRA2AP08913 450 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 OSMP13725 252 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 C5AR1P21730 350 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 TRA2BP62995 288 aaKnown RBP20.62■□□□□ 0.89
SHMT1-202ENST00000352886 KRT33BQ14525 404 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 ZNF404Q494X3 552 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 USP43Q70EL4 1123 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 CRELD1Q96HD1 420 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 IL4I1Q96RQ9 567 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 ROGDIQ9GZN7 287 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 OR51E2Q9H255 320 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 ZCCHC3Q9NUD5 404 aaKnown RBP20.62■□□□□ 0.89
SHMT1-202ENST00000352886 MOSPD1Q9UJG1 213 aa20.62■□□□□ 0.89
SHMT1-202ENST00000352886 DOCK8Q8NF50 2099 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 SERPINB7O75635 380 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 ADH1BP00325 375 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 DRD2P14416 443 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 HOXB3P14651 431 aaPredicted RBP20.61■□□□□ 0.89
SHMT1-202ENST00000352886 PTGER1P34995 402 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 FEN1P39748 380 aaKnown RBP20.61■□□□□ 0.89
SHMT1-202ENST00000352886 BCL6P41182 706 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 RGS6P49758 472 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 SOWAHCQ53LP3 525 aaPredicted RBP20.61■□□□□ 0.89
SHMT1-202ENST00000352886 YAF2Q8IY57 180 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 OTUB1Q96FW1 271 aaPredicted RBP20.61■□□□□ 0.89
SHMT1-202ENST00000352886 DHRS1Q96LJ7 313 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 ANKHQ9HCJ1 492 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 SLC35C2Q9NQQ7 365 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 CNOT2Q9NZN8 540 aaKnown RBP20.61■□□□□ 0.89
SHMT1-202ENST00000352886 MDC1Q14676 2089 aaKnown RBP20.61■□□□□ 0.89
SHMT1-202ENST00000352886 ZW10O43264 779 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 IGFBP1P08833 259 aaPredicted RBP20.61■□□□□ 0.89
SHMT1-202ENST00000352886 NR2F1P10589 423 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 CDH3P22223 829 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 PKLRP30613 574 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 NCBP2P52298 156 aaKnown RBP eCLIP20.61■□□□□ 0.891e-6■■□□□ 14.2
SHMT1-202ENST00000352886 OLR1P78380 273 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 C7orf61Q8IZ16 206 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 TTLQ8NG68 377 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 CDCA4Q9BXL8 241 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 MTIF3Q9H2K0 278 aaKnown RBP20.61■□□□□ 0.89
SHMT1-202ENST00000352886 RNF167Q9H6Y7 350 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 MGAT4BQ9UQ53 548 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 IFT52Q9Y366 437 aa20.61■□□□□ 0.89
SHMT1-202ENST00000352886 TLR4O00206 839 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 FAAHO00519 579 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 OXSR1O95747 527 aaPredicted RBP20.6■□□□□ 0.89
SHMT1-202ENST00000352886 APODP05090 189 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 DBTP11182 482 aaKnown RBP20.6■□□□□ 0.89
SHMT1-202ENST00000352886 RELAQ04206 551 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 MED22Q15528 200 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 OLIG3Q7RTU3 272 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 ZNF367Q7RTV3 350 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 OR2L8Q8NGY9 312 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 C9orf43Q8TAL5 461 aaPredicted RBP20.6■□□□□ 0.89
SHMT1-202ENST00000352886 OR5M11Q96RB7 305 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 TIMM29Q9BSF4 260 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 FAIM2Q9BWQ8 316 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 KCNK12Q9HB15 430 aa20.6■□□□□ 0.89
SHMT1-202ENST00000352886 MRPS30Q9NP92 439 aaKnown RBP20.6■□□□□ 0.89
SHMT1-202ENST00000352886 GPC6Q9Y625 555 aaPredicted RBP20.6■□□□□ 0.89
SHMT1-202ENST00000352886 RANBP2P49792 3224 aaKnown RBP20.6■□□□□ 0.89
SHMT1-202ENST00000352886 METTL15A6NJ78 407 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 C4orf51C9J302 202 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 CEACAM5P06731 702 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 PRKAG1P54619 331 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 ILKQ13418 452 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 SLC9A5Q14940 896 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 FAM92BQ6ZTR7 304 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 COMTD1Q86VU5 262 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 OR52E1Q8NGJ3 308 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 OR8K5Q8NH50 307 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 MMP27Q9H306 513 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 TRNAU1APQ9NX07 287 aaKnown RBP20.59■□□□□ 0.89
SHMT1-202ENST00000352886 EHD3Q9NZN3 535 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 XIRP2A4UGR9 3374 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 PDZK1P1A8MUH7 402 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms