RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CAMKMTQ7Z624 323 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 KIAA0907Q7Z7F0 614 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 VRK3Q8IV63 474 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ADGRF3Q8IZF5 1079 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 IL17RCQ8NAC3 791 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 OR5AK3PQ8NH89 298 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 WDR20Q8TBZ3 569 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 SUSD3Q96L08 255 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 P2RY13Q9BPV8 354 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 SLC35A5Q9BS91 424 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ATG10Q9H0Y0 220 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 NT5DC2Q9H857 520 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ZSCAN32Q9NX65 697 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 TVP23BQ9NYZ1 205 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 TRPM5Q9NZQ8 1165 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 RAB23Q9ULC3 237 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 RUVBL1Q9Y265 456 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 KCNMB2Q9Y691 235 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 HELZP42694 1942 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 SCN8AQ9UQD0 1980 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 G3V3Q6 166 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 C6orf47O95873 294 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 IFNW1P05000 195 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ANXA4P09525 319 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 ANXA3P12429 323 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 CFL1P23528 166 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 ELAVL4P26378 380 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 STOMP27105 288 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 CCR7P32248 378 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 CCT3P49368 545 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 INPP1P49441 399 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 PTPN5P54829 565 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 CRYZQ08257 329 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 TAF10Q12962 218 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 BAMBIQ13145 260 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 CAMK2DQ13557 499 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ELOAQ14241 798 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 CHRNA6Q15825 494 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 MPEG1Q2M385 716 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 C3orf38Q5JPI3 329 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 RTL4Q6ZR62 310 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ADGRD2Q7Z7M1 963 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 NR2C2APQ86WQ0 139 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ARIH2OSQ8N7S6 290 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 OR52N2Q8NGI0 321 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 OR10Z1Q8NGY1 313 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ST8SIA4Q92187 359 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 SLC9A6Q92581 669 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 HGDQ93099 445 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 FBXO32Q969P5 355 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ZNF578Q96N58 590 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 ZNF582Q96NG8 517 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 WFDC6Q9BQY6 131 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 SYT17Q9BSW7 474 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 C2orf49Q9BVC5 232 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 REG4Q9BYZ8 158 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 MS4A7Q9GZW8 240 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 FBXO44Q9H4M3 255 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 TMEM38AQ9H6F2 299 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 RC3H2Q9HBD1 1191 aaKnown RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 NUDT15Q9NV35 164 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 PIM2Q9P1W9 311 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 LHX3Q9UBR4 397 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 ZNF282Q9UDV7 671 aaPredicted RBP6.45□□□□□ -1.38
VPS39-202ENST00000348544 UBQLN2Q9UHD9 624 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 MAP4K5Q9Y4K4 846 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 CENPFP49454 3210 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 NINQ8N4C6 2090 aa6.45□□□□□ -1.38
VPS39-202ENST00000348544 PCP4L1A6NKN8 68 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 RNASET2O00584 256 aaKnown RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 SMAD6O43541 496 aaKnown RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 LZTS3O60299 673 aaPredicted RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 IFNA7P01567 189 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 CTSHP09668 335 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ACSM4P0C7M7 580 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 PCSK2P16519 638 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 GABRA5P31644 462 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ATP12AP54707 1039 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 PFN3P60673 137 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 CSTF1Q05048 431 aaKnown RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 RING1Q06587 406 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 C2orf80Q0P641 193 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 DSG2Q14126 1118 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 STK11Q15831 433 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 SLC5A12Q1EHB4 618 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 PRSS53Q2L4Q9 553 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 UAP1L1Q3KQV9 507 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 KLHL12Q53G59 568 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ARHGAP15Q53QZ3 475 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 XKR6Q5GH73 641 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ANXA8L1Q5VT79 327 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 BICRALQ6AI39 1079 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 PGBD2Q6P3X8 592 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 CHMP1BQ7LBR1 199 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 SHFQ7M4L6 423 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 FAM26EQ8N5C1 309 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 MS4A15Q8N5U1 240 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ATAD1Q8NBU5 361 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ZNF485Q8NCK3 441 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 CIDECQ96AQ7 238 aaPredicted RBP6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms