RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CCDC81Q6ZN84 652 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 DGAT2L6Q6ZPD8 337 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 FUNDC1Q8IVP5 155 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 SUN3Q8TAQ9 357 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 PTPMT1Q8WUK0 201 aaPredicted RBP20.73■□□□□ 0.91
SDC3-202ENST00000339394 DUSP26Q9BV47 211 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 BHLHE41Q9C0J9 482 aaPredicted RBP20.73■□□□□ 0.91
SDC3-202ENST00000339394 CCDC167Q9P0B6 97 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 ARL2BPQ9Y2Y0 163 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 URB1O60287 2271 aaKnown RBP20.73■□□□□ 0.91
SDC3-202ENST00000339394 IGHV1-45A0A0A0MS14 117 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 A0A1W2PQ72 361 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 PDPK1O15530 556 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 ATP1B1P05026 303 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 COX6A1P12074 109 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 TNNI3P19429 210 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 KIR3DL1P43629 444 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 PHC1P78364 1004 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 ATP1A4Q13733 1029 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 UBAP2LQ14157 1087 aaKnown RBP20.72■□□□□ 0.91
SDC3-202ENST00000339394 PCOLCEQ15113 449 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 MTDHQ86UE4 582 aaKnown RBP20.72■□□□□ 0.91
SDC3-202ENST00000339394 BCAS4Q8TDM0 211 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 IP6K3Q96PC2 410 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 GLIPR2Q9H4G4 154 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 C17orf105B2RV13 164 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 SEC24DO94855 1032 aaPredicted RBP20.72■□□□□ 0.91
SDC3-202ENST00000339394 PGRP06401 933 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 CD1EP15812 388 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 NTSP30990 170 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 PTGER1P34995 402 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 FRKP42685 505 aaPredicted RBP20.72■□□□□ 0.91
SDC3-202ENST00000339394 NCBP2P52298 156 aaKnown RBP eCLIP20.72■□□□□ 0.91
SDC3-202ENST00000339394 POLR2JP52435 117 aaKnown RBP20.72■□□□□ 0.91
SDC3-202ENST00000339394 DGKQP52824 942 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 BROXQ5VW32 411 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 OR4F3Q6IEY1 312 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 PAPD4Q6PIY7 484 aaKnown RBP20.72■□□□□ 0.91
SDC3-202ENST00000339394 NDUFAF7Q7L592 441 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 ZSCAN1Q8NBB4 408 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 THAP4Q8WY91 577 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 RIT1Q92963 219 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 AMDHD1Q96NU7 426 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 LPAR4Q99677 370 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 PELOQ9BRX2 385 aaKnown RBP20.72■□□□□ 0.91
SDC3-202ENST00000339394 ZNF700Q9H0M5 742 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 TMEM45AQ9NWC5 275 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 CLCA3PQ9Y6N3 262 aa20.72■□□□□ 0.91
SDC3-202ENST00000339394 CCDC88CQ9P219 2028 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 SCN2AQ99250 2005 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 FAM234BA2RU67 622 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 PEX12O00623 359 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 NDUFAB1O14561 156 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 CCDC22O60826 627 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 IL6P05231 212 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 EFNA1P20827 205 aaPredicted RBP20.71■□□□□ 0.91
SDC3-202ENST00000339394 S100A3P33764 101 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 GALNSP34059 522 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 MANFP55145 182 aaKnown RBP20.71■□□□□ 0.91
SDC3-202ENST00000339394 WNT3P56703 355 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 CDC20Q12834 499 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 AGKQ53H12 422 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 NATD1Q8N6N6 113 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 AMER2Q8N7J2 671 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 ADCY4Q8NFM4 1077 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 DOK4Q8TEW6 326 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 ZBED6CLQ96FA7 236 aaPredicted RBP20.71■□□□□ 0.91
SDC3-202ENST00000339394 VPS50Q96JG6 964 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 ACSS1Q9NUB1 689 aaPredicted RBP20.71■□□□□ 0.91
SDC3-202ENST00000339394 MRGBPQ9NV56 204 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 FBXL4Q9UKA2 621 aa20.71■□□□□ 0.91
SDC3-202ENST00000339394 NUP210LQ5VU65 1888 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 NSG1A0A0A6YYJ2 146 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 FCHO1O14526 889 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 SCN2BO60939 215 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 NT5EP21589 574 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 RCAN2Q14206 197 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 TERF2Q15554 542 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 LTB4RQ15722 352 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 BLOC1S3Q6QNY0 202 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 ZNF551Q7Z340 670 aaPredicted RBP20.7■□□□□ 0.9
SDC3-202ENST00000339394 ANKS4BQ8N8V4 417 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 OR9A2Q8NGT5 310 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 DAZLQ92904 295 aaKnown RBP20.7■□□□□ 0.9
SDC3-202ENST00000339394 TUBB6Q9BUF5 446 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 CXorf21Q9HAI6 301 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 ARMCX1Q9P291 453 aa20.7■□□□□ 0.9
SDC3-202ENST00000339394 A0A1W2PRB8 838 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 SAGE2PA6NJ88 616 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 PGDP52209 483 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 PRICKLE4Q2TBC4 344 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 GALNT12Q8IXK2 581 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 OR14A16Q8NHC5 309 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 VPS33AQ96AX1 596 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 IMMP1LQ96LU5 166 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 OR52E6Q96RD3 313 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 ZNF160Q9HCG1 818 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 CPNE5Q9HCH3 593 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 ZZEF1O43149 2961 aa20.69■□□□□ 0.9
SDC3-202ENST00000339394 PRSS51A0A1B0GVH4 220 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms