RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 XAGE5Q8WWM1 108 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 MAPKAP1Q9BPZ7 522 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ISCUQ9H1K1 167 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 COL20A1Q9P218 1284 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ADCY9O60503 1353 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM265A0A087WTH1 108 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 A8MVM7 634 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 FABP1P07148 127 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 STAG3L3P0CL85 134 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 PCP11498 1178 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 HOXA7P31268 230 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TNFAIP1Q13829 316 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM95Q3KNT9 176 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC36A2Q495M3 483 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 BCL7AQ4VC05 210 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 OR51T1Q8NGJ9 327 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 SPRYD4Q8WW59 207 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 BRI3BPQ8WY22 251 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 MAP4K1Q92918 833 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 COA7Q96BR5 231 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 OMDQ99983 421 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC52A1Q9NWF4 448 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TESQ9UGI8 421 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 USP22Q9UPT9 525 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 CNTN6Q9UQ52 1028 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 GPATCH8Q9UKJ3 1502 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 NOS1P29475 1434 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 OR6C68A6NDL8 312 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 OR6C76A6NM76 312 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 SIGLEC6O43699 453 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 CPNE6O95741 557 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 CTSLP07711 333 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 HSD17B1P14061 328 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TRHRP34981 398 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 NUDT1P36639 197 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 GYG1P46976 350 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 HSD17B7P56937 341 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 GANABQ14697 944 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 CATSPEREQ5SY80 951 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 BEND2Q8NDZ0 799 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 SHKBP1Q8TBC3 707 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 HNRNPLLQ8WVV9 542 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 DPH3Q96FX2 82 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 NIPSNAP3BQ9BS92 247 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 NMNAT2Q9BZQ4 307 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF442Q9H7R0 627 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 NMRAL1Q9HBL8 299 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 LRRC4CQ9HCJ2 640 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ZIM2Q9NZV7 527 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNHIT2Q9UHR6 403 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TMX2Q9Y320 296 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ABCB11O95342 1321 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 EDDM13A0A1B0GTR0 161 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A1B0GUH1 482 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 CEBPZOSA8MTT3 80 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 F5H5P2 479 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC1A7O00341 560 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 LRG1P02750 347 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 OPN1LWP04000 364 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 DLDP09622 509 aaKnown RBP7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 OR13C7P0DN81 318 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 ETFAP13804 333 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 IL7RP16871 459 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 KDELR1P24390 212 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 OTX2P32243 289 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 CTSWP56202 376 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 RANP62826 216 aaKnown RBP7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 FOXM1Q08050 763 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 CD47Q08722 323 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 S100A7L2Q5SY68 101 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 YRDCQ86U90 279 aaKnown RBP7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 PDSS2Q86YH6 399 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 FANK1Q8TC84 345 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 HHIPL1Q96JK4 782 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM20AQ96MK3 541 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 TMPRSS13Q9BYE2 586 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC19A3Q9BZV2 496 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 ALG9Q9H6U8 611 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 AMBNQ9NP70 447 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC6A20Q9NP91 592 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 ARHGAP5Q13017 1502 aa7.34□□□□□ -1.24
LIMCH1-201ENST00000313860 KIAA0232Q92628 1395 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ANKRD66B4E2M5 251 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 F5H5T6 163 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 GCP02774 474 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 CST2P09228 141 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 SHMT1P34896 483 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 MMP12P39900 470 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 RAB27AP51159 221 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 TAS2R43P59537 309 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 PLGLB1Q02325 96 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 CHRNEQ04844 493 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 HNRNPA0Q13151 305 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 KCNJ8Q15842 424 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 ZDHHC20Q5W0Z9 365 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 OR4A47Q6IF82 309 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 GPC2Q8N158 579 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 NLGN1Q8N2Q7 840 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 LRRC29Q8WV35 223 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms