RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 KCNS2Q9ULS6 477 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 NPIPA5A0A0B4J1W7 369 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 TTC24A2A3L6 582 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-201ENST00000303395 LCMT2O60294 686 aaKnown RBP5.04□□□□□ -1.6
SCN1A-201ENST00000303395 PRNPP04156 253 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 GLAP06280 429 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 SLC5A2P31639 672 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 BMXP51813 675 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 TAS2R39P59534 338 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 CAPSQ13938 189 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 RBM39Q14498 530 aaKnown RBP5.04□□□□□ -1.6
SCN1A-201ENST00000303395 LASP1Q14847 261 aaKnown RBP5.04□□□□□ -1.6
SCN1A-201ENST00000303395 GRK1Q15835 563 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.04□□□□□ -1.63e-6■■■□□ 18.5
SCN1A-201ENST00000303395 SLC30A6Q6NXT4 461 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 SPPL2CQ8IUH8 684 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 OR10A6Q8NH74 314 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF675Q8TD23 568 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 MGLLQ99685 303 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 DBNDD1Q9H9R9 158 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 KLHL9Q9P2J3 617 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 DNMT3AQ9Y6K1 912 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-201ENST00000303395 DDX60Q8IY21 1712 aaKnown RBP5.04□□□□□ -1.6
SCN1A-201ENST00000303395 SPTBN2O15020 2390 aa5.04□□□□□ -1.6
SCN1A-201ENST00000303395 LYRM1O43325 122 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 KDM4BO94953 1096 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ETS2P15036 469 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RAB7AP51149 207 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 NR0B1P51843 470 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 DGKQP52824 942 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PLA2G16P53816 162 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CDH15P55291 814 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF763Q0D2J5 394 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SPHARQ15513 63 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 C4orf17Q53FE4 359 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 NHSL2Q5HYW2 709 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RFWD3Q6PCD5 774 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ARL9Q6T311 187 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 LBX2Q6XYB7 198 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 NDUFAF7Q7L592 441 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 MOB1BQ7L9L4 216 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GPR149Q86SP6 731 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GRIN3AQ8TCU5 1115 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 OR5P2Q8WZ92 322 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 TM9SF4Q92544 642 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 DOCK2Q92608 1830 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 NSMAFQ92636 917 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 IL4I1Q96RQ9 567 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RAD9AQ99638 391 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SLC17A5Q9NRA2 495 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SERINC1Q9NRX5 453 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 MED9Q9NWA0 146 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 VPS29Q9UBQ0 182 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PRELID3BQ9Y3B1 194 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 NME7Q9Y5B8 376 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 FANCMQ8IYD8 2048 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF878C9JN71 531 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 E9PI62 339 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SEC14L5O43304 696 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 EOMESO95936 686 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CD48P09326 243 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ASPAP45381 313 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RPIAP49247 311 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 KCNAB2Q13303 367 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 MBTPS1Q14703 1052 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GNMTQ14749 295 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 DCST2Q5T1A1 773 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 HIST2H3PS2Q5TEC6 136 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 C9orf57Q5W0N0 161 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 APOBEC3HQ6NTF7 200 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 KCTD18Q6PI47 426 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 FAM111BQ6SJ93 734 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 TMPPEQ6ZT21 453 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SLC37A3Q8NCC5 494 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 OR52N1Q8NH53 320 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF417Q8TAU3 575 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 HTRA1Q92743 480 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 DNASE1L2Q92874 299 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ELMOD3Q96FG2 381 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SSX3Q99909 188 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 OCSTAMPQ9BR26 566 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 B3GNT5Q9BYG0 378 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 DNAJC5Q9H3Z4 198 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 IPPKQ9H8X2 491 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SNTG1Q9NSN8 517 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SMOXQ9NWM0 555 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SMPD4Q9NXE4 827 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 OGDHLQ9ULD0 1010 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 UBR2Q8IWV8 1755 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SGK494L7N484 410 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RGS9O75916 674 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 HTR3BO95264 441 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GSRP00390 522 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ALDOAP04075 364 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 IFI6P09912 130 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PAX6P26367 422 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 MTNR1BP49286 362 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 WNT4P56705 351 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 DAOAP59103 153 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GUK1Q16774 197 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms