RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CRYZQ08257 329 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 DUSP8Q13202 625 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 SPRED3Q2MJR0 410 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 KHDRBS2Q5VWX1 349 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 OR4C11Q6IEV9 310 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 MED27Q6P2C8 311 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 GPR180Q86V85 440 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 LAS2Q8IYD9 372 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 NAXEQ8NCW5 288 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 RGMAQ96B86 450 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 C18orf12Q96KH6 178 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 DOCK7Q96N67 2140 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 GAL3ST4Q96RP7 486 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 SECISBP2Q96T21 854 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 TIMP4Q99727 224 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 WDR83Q9BRX9 315 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 WWTR1Q9GZV5 400 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 PRDM14Q9GZV8 571 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 DDX47Q9H0S4 455 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 CNOT11Q9UKZ1 510 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 ARID1AO14497 2285 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 FBN3Q75N90 2809 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 CD8B2A6NJW9 211 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 RTCAO00442 366 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 OR10H2O60403 315 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 CCNT2O60583 730 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 CDH16O75309 829 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 IL18BPO95998 194 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 PCNAP12004 261 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 CTSSP25774 331 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 ADSLP30566 484 aaPredicted RBP13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 HOXC12P31275 282 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 SLC37A1P57057 533 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 TNFRSF17Q02223 184 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 PCDH1Q08174 1060 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 SLAMF1Q13291 335 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 EBPQ15125 230 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 RPS6KA2Q15349 733 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 NHSL2Q5HYW2 709 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 DEPDC1Q5TB30 811 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 PACS2Q86VP3 889 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 ANKMY2Q8IV38 441 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 OR4N5Q8IXE1 308 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 ZCCHC7Q8N3Z6 543 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 DIO2Q92813 273 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 TP53INP1Q96A56 240 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 PPWD1Q96BP3 646 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 YIPF4Q9BSR8 244 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 MCMBPQ9BTE3 642 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 CD244Q9BZW8 370 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 CALHM2Q9HA72 323 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 SNX15Q9NRS6 342 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 BEX4Q9NWD9 120 aaPredicted RBP13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 TXNDC16Q9P2K2 825 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 RNF112Q9ULX5 631 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 SNX12Q9UMY4 172 aa13.55□□□□□ -0.24
CCDC88B-201ENST00000301897 MBD3L4A6NDZ8 208 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 MBD3L3A6NE82 208 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 MBD3L5A6NJ08 208 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 TRAPPC6AO75865 159 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 WISP3O95389 354 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 GPR75O95800 540 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 TGFB1P01137 390 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 HPNP05981 417 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 GCKP35557 465 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 PIK3CBP42338 1070 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 MASP1P48740 699 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 CDK9P50750 372 aaKnown RBP13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 ZNF136P52737 540 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 HERVK_113P63132 956 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 ERVK-8P63133 956 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 RCAN2Q14206 197 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 ZNF267Q14586 743 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 SHEQ5VZ18 495 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 VASNQ6EMK4 673 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 POMZP3Q6PJE2 187 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 SLC35F6Q8N357 371 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 FBXO36Q8NEA4 188 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 WFDC11Q8NEX6 87 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 OR7G3Q8NG95 312 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 MBD3L2Q8NHZ7 208 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 CDKL2Q92772 493 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 RIT1Q92963 219 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 NTNG2Q96CW9 530 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 ZFP3Q96NJ6 502 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 ERVK-6Q9BXR3 956 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 PLEKHF2Q9H8W4 249 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 WDR41Q9HAD4 459 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 LYARQ9NX58 379 aaKnown RBP13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 CAMK2AQ9UQM7 478 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 ERVK-19Q9WJR5 959 aa13.54□□□□□ -0.24
CCDC88B-201ENST00000301897 A0A1B0GTL3 188 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 CLCA1A8K7I4 914 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 EEF1E1-BLOC1S5C9J1V9 151 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 E7ESA3 106 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 HRKO00198 91 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 ARHGEF9O43307 516 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 EEF1E1O43324 174 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 SEC31AO94979 1220 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 INHBBP09529 407 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms