RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 NBASA2RRP1 2371 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 CPAMD8Q8IZJ3 1885 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 ATP6AP2A0A1C7CYW4 349 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 DYTNA2CJ06 578 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 TTLL8A6PVC2 850 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 GABRR3A8MPY1 467 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 NPIPB8E9PQR5 432 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 ATP6AP2O75787 350 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 CT62P0C5K7 136 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 CPMP14384 443 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 GRK2P25098 689 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 TACR1P25103 407 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 MLF1P58340 268 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 ERVK-8P63133 956 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 TLE1Q04724 770 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 ZNF763Q0D2J5 394 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 C2orf80Q0P641 193 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 BIKQ13323 160 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 TUBA3CQ13748 450 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 ZNF267Q14586 743 aaPredicted RBP12.43□□□□□ -0.42
VPS28-201ENST00000292510 ZNF169Q14929 603 aaPredicted RBP12.43□□□□□ -0.42
VPS28-201ENST00000292510 PRSS53Q2L4Q9 553 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 RFTN2Q52LD8 501 aaPredicted RBP12.43□□□□□ -0.42
VPS28-201ENST00000292510 XKR7Q5GH72 579 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 ZNF468Q5VIY5 522 aaPredicted RBP12.43□□□□□ -0.42
VPS28-201ENST00000292510 TUBA3EQ6PEY2 450 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 HSDL2Q6YN16 418 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 HAS2Q92819 552 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 RIT1Q92963 219 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 EXOSC8Q96B26 276 aaKnown RBP12.43□□□□□ -0.42
VPS28-201ENST00000292510 EGLN2Q96KS0 407 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 PPP1R36Q96LQ0 422 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.43□□□□□ -0.42
VPS28-201ENST00000292510 UTS2RQ9UKP6 389 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 ERVK-19Q9WJR5 959 aa12.43□□□□□ -0.42
VPS28-201ENST00000292510 OR5H15A6NDH6 313 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 TMEM200CA6NKL6 621 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 PEX11AO75192 247 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 ZFAND5O76080 213 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 IGKV3-11P04433 115 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 DRD2P14416 443 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 PLA2G2AP14555 144 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 PORP16435 677 aaPredicted RBP12.42□□□□□ -0.42
VPS28-201ENST00000292510 NT5EP21589 574 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 TNFSF10P50591 281 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 HEPACAMQ14CZ8 416 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 TLR1Q15399 786 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 LTB4RQ15722 352 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 PDCD2Q16342 344 aaPredicted RBP12.42□□□□□ -0.42
VPS28-201ENST00000292510 SPRED3Q2MJR0 410 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 FAM71E1Q6IPT2 247 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 TICAM1Q8IUC6 712 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 GALNT12Q8IXK2 581 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 C9orf40Q8IXQ3 194 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 LGI4Q8N135 537 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 C7orf57Q8NEG2 295 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 CLHC1Q8NHS4 586 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 FAM76AQ8TAV0 307 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.42□□□□□ -0.42
VPS28-201ENST00000292510 GFM2Q969S9 779 aaKnown RBP12.42□□□□□ -0.42
VPS28-201ENST00000292510 CNRIP1Q96F85 164 aaPredicted RBP12.42□□□□□ -0.42
VPS28-201ENST00000292510 FBXL20Q96IG2 436 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 FCRL1Q96LA6 429 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 ZNF681Q96N22 645 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 SIGLEC12Q96PQ1 595 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 PELOQ9BRX2 385 aaKnown RBP12.42□□□□□ -0.42
VPS28-201ENST00000292510 RNF32Q9H0A6 362 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 CXorf21Q9HAI6 301 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 MYNNQ9NPC7 610 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 PFDN4Q9NQP4 134 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 PNPOQ9NVS9 261 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 ZNF446Q9NWS9 450 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 COPS7AQ9UBW8 275 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 EXO1Q9UQ84 846 aaKnown RBP12.42□□□□□ -0.42
VPS28-201ENST00000292510 RAP2CQ9Y3L5 183 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 PCDHGA10Q9Y5H3 936 aa12.42□□□□□ -0.42
VPS28-201ENST00000292510 HELZ2Q9BYK8 2649 aaKnown RBP12.42□□□□□ -0.42
VPS28-201ENST00000292510 GCN1Q92616 2671 aaKnown RBP12.42□□□□□ -0.42
VPS28-201ENST00000292510 RELNP78509 3460 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 UQCRHLA0A096LP55 91 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 WWP2O00308 870 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 DYRK3O43781 588 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 OR2J2O76002 312 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 LRATO95237 230 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 CLPSP04118 112 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 SDC1P18827 310 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 DDCP20711 480 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 SSTR4P31391 388 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 GALNSP34059 522 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 CD96P40200 585 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 RNF4P78317 190 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 OC90Q02509 493 aaPredicted RBP12.41□□□□□ -0.42
VPS28-201ENST00000292510 IGFBP7Q16270 282 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 SPINK14Q6IE38 97 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 FAM111BQ6SJ93 734 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 ARMC10Q8N2F6 343 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 CISD2Q8N5K1 135 aaKnown RBP12.41□□□□□ -0.42
VPS28-201ENST00000292510 GOLGA6L1Q8N7Z2 621 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 SIMC1Q8NDZ2 872 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 ADCY4Q8NFM4 1077 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms