RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 ZNF282Q9UDV7 671 aaPredicted RBP9.82□□□□□ -0.84
UPF3B-201ENST00000276201 PHF11Q9UIL8 331 aa9.82□□□□□ -0.84
UPF3B-201ENST00000276201 MBD1Q9UIS9 605 aaPredicted RBP9.82□□□□□ -0.84
UPF3B-201ENST00000276201 SPAG17Q6Q759 2223 aa9.82□□□□□ -0.84
UPF3B-201ENST00000276201 WDR87Q6ZQQ6 2873 aa9.82□□□□□ -0.84
UPF3B-201ENST00000276201 EP300Q09472 2414 aaPredicted RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 TEX51A0A1B0GUA7 166 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 LOC105371267A0A1B0GV96 52 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 FADS2P1A8MWK0 482 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 CACNB4O00305 520 aaPredicted RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 JUPP14923 745 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 XCR1P46094 333 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 VASPP50552 380 aaPredicted RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 AP2S1P53680 142 aaPredicted RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 RAB25P57735 213 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 FAPQ12884 760 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 MLLT11Q13015 90 aaPredicted RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 RIN1Q13671 783 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 C9orf64Q5T6V5 341 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 LIPJQ5W064 366 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 FRG2Q64ET8 278 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 Q6ZPB1 254 aaPredicted RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 ZNF621Q6ZSS3 439 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 CACUL1Q86Y37 369 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 RASGRP3Q8IV61 690 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 FAM109AQ8N4B1 249 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 DUSP18Q8NEJ0 188 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 GPR151Q8TDV0 419 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 SLC25A46Q96AG3 418 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 EGLN2Q96KS0 407 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 FRG2BQ96QU4 278 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 KCNS3Q9BQ31 491 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 SPON2Q9BUD6 331 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 C2orf49Q9BVC5 232 aaPredicted RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 DUSP15Q9H1R2 295 aaPredicted RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 TMEM38AQ9H6F2 299 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 BPIFA1Q9NP55 256 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 ISYNA1Q9NPH2 558 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 TMEM184CQ9NVA4 438 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 LHX3Q9UBR4 397 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 SLC25A13Q9UJS0 675 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 FZD4Q9ULV1 537 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 HS3ST2Q9Y278 367 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 GVINP1Q7Z2Y8 2422 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 IGHV1OR15-9A0A0B4J2B8 117 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 EDDM13A0A1B0GTR0 161 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 SCAMP2O15127 329 aaKnown RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 ACADMP11310 421 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 PSMA1P25786 263 aaKnown RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 CRISP3P54108 245 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 AP1S1P61966 158 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 SLAMF1Q13291 335 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 NFATC2Q13469 925 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 PLK5Q496M5 336 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 CRB2Q5IJ48 1285 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 LINGO4Q6UY18 593 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 SYT12Q8IV01 421 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 SPERTQ8NA61 448 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 FAM46DQ8NEK8 389 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 VPS37AQ8NEZ2 397 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 PROKR2Q8NFJ6 384 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 GEMIN6Q8WXD5 167 aaKnown RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 SIPA1Q96FS4 1042 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 TPD52L3Q96J77 140 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 ZC3H10Q96K80 434 aaKnown RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 SOSTQ9BQB4 213 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 MND1Q9BWT6 205 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 GPR63Q9BZJ6 419 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 FBRSQ9HAH7 460 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 USP36Q9P275 1121 aaKnown RBP9.81□□□□□ -0.84
UPF3B-201ENST00000276201 RAB23Q9ULC3 237 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 CYP8B1Q9UNU6 501 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 PCDHGC4Q9Y5F7 938 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 PRSS21Q9Y6M0 314 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 FAM186AA6NE01 2351 aa9.81□□□□□ -0.84
UPF3B-201ENST00000276201 ABCA7Q8IZY2 2146 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 SDK1Q7Z5N4 2213 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 K7ERQ8 282 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 CBX4O00257 560 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 RNASET2O00584 256 aaKnown RBP9.8□□□□□ -0.84
UPF3B-201ENST00000276201 TNFRSF21O75509 655 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 B3GALT4O96024 378 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 IFNA14P01570 189 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 CSF3P09919 207 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 SRCP12931 536 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 COX7A2P14406 83 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 OR3A3P47888 321 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 IDH2P48735 452 aaKnown RBP9.8□□□□□ -0.84
UPF3B-201ENST00000276201 NUDT6P53370 316 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 CRISP1P54107 249 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 ARF5P84085 180 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 EFR3AQ14156 821 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 QPRTQ15274 297 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 CPSF6Q16630 551 aaKnown RBP eCLIP9.8□□□□□ -0.842e-11■■■■□ 23.1
UPF3B-201ENST00000276201 EXOC3L2Q2M3D2 409 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 SLC25A30Q5SVS4 291 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 METTL3Q86U44 580 aaKnown RBP9.8□□□□□ -0.84
UPF3B-201ENST00000276201 LAS2Q8IYD9 372 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 NANOGP1Q8N7R0 232 aa9.8□□□□□ -0.84
UPF3B-201ENST00000276201 PIH1D2Q8WWB5 315 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms