RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SEC24DO94855 1032 aaPredicted RBP15.52■□□□□ 0.08
USP4-201ENST00000265560 CAPNS1P04632 268 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 FCGR1AP12314 374 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 TDGF1P13385 188 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 MPIP34949 423 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 RNF144AP50876 292 aaPredicted RBP15.52■□□□□ 0.08
USP4-201ENST00000265560 PDK3Q15120 406 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 DUSP7Q16829 419 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 PPP4R4Q6NUP7 873 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 PEX11GQ96HA9 241 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.52■□□□□ 0.08
USP4-201ENST00000265560 ACSS1Q9NUB1 689 aaPredicted RBP15.52■□□□□ 0.08
USP4-201ENST00000265560 EHD3Q9NZN3 535 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 PILRBQ9UKJ0 227 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 IGHV1OR21-1A0A087WYE8 117 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 ZSCAN9O15535 394 aaPredicted RBP15.52■□□□□ 0.08
USP4-201ENST00000265560 ALAS2P22557 587 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 CSF2RBP32927 897 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 IL1RL1Q01638 556 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 TRMT12Q53H54 448 aaKnown RBP15.52■□□□□ 0.08
USP4-201ENST00000265560 SWT1Q5T5J6 900 aaKnown RBP15.52■□□□□ 0.08
USP4-201ENST00000265560 CBLL1Q75N03 491 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 ZNF655Q8N720 491 aaPredicted RBP15.52■□□□□ 0.08
USP4-201ENST00000265560 CATSPER1Q8NEC5 780 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 OR52J3Q8NH60 311 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 TMEM184BQ9Y519 407 aaPredicted RBP15.52■□□□□ 0.08
USP4-201ENST00000265560 SLC22A7Q9Y694 548 aa15.52■□□□□ 0.08
USP4-201ENST00000265560 KNTC1P50748 2209 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 PRAMEF25A6NGN4 478 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 J3KTA2 159 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 SLC28A2O43868 658 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 MATN1P21941 496 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 PCGF2P35227 344 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 EEF1A2Q05639 463 aaKnown RBP15.52■□□□□ 0.07
USP4-201ENST00000265560 VEZF1Q14119 521 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 MAP7Q14244 749 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 TMEM126BQ8IUX1 230 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 OFCC1Q8IZS5 231 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 OR7G2Q8NG99 324 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 FBXL20Q96IG2 436 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 SLC35G5Q96KT7 338 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 WFDC6Q9BQY6 131 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 GAREM1Q9H706 876 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 ZNF451Q9Y4E5 1061 aa15.52■□□□□ 0.07
USP4-201ENST00000265560 C5orf58C9J3I9 102 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 G3V2T6 193 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 FADDQ13158 208 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 MAPK11Q15759 364 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 EIF3MQ7L2H7 374 aaKnown RBP15.51■□□□□ 0.07
USP4-201ENST00000265560 TMPRSS9Q7Z410 1059 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 SDR16C5Q8N3Y7 309 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 DNAJC22Q8N4W6 341 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 RCBTB1Q8NDN9 531 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 GAB3Q8WWW8 586 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 YIPF2Q9BWQ6 316 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 GIMAP4Q9NUV9 329 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 LYARQ9NX58 379 aaKnown RBP15.51■□□□□ 0.07
USP4-201ENST00000265560 RHCGQ9UBD6 479 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 LILRA5A6NI73 299 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 CHST10O43529 356 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 TBX19O60806 448 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 FOXL2P58012 376 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 KCNJ10P78508 379 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 GUSBP11Q6P575 273 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 TMEM154Q6P9G4 183 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 ARL10Q8N8L6 244 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 TTC29Q8NA56 475 aaPredicted RBP15.51■□□□□ 0.07
USP4-201ENST00000265560 OR4K14Q8NGD5 310 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 TBC1D20Q96BZ9 403 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 ELP4Q96EB1 424 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 ZNF597Q96LX8 424 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 C9orf16Q9BUW7 83 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 ASPSCR1Q9BZE9 553 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 RUBCNLQ9H714 662 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 ANKHQ9HCJ1 492 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 DNAJB9Q9UBS3 223 aa15.51■□□□□ 0.07
USP4-201ENST00000265560 ARAFP10398 606 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 PPP2R1BP30154 601 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 TLX1P31314 330 aaPredicted RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.5■□□□□ 0.07
USP4-201ENST00000265560 DGAT2L6Q6ZPD8 337 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 ZDHHC13Q8IUH4 622 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 CA13Q8N1Q1 262 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 AMER2Q8N7J2 671 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 CCDC74AQ96AQ1 378 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 ZG16BQ96DA0 208 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 GTPBP2Q9BX10 602 aaKnown RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 IL1RAPQ9NPH3 570 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 PRMT8Q9NR22 394 aaPredicted RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 DHCR7Q9UBM7 475 aaKnown RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 NDOR1Q9UHB4 597 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 RPS6KA6Q9UK32 745 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 GMEB2Q9UKD1 530 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 PSME2Q9UL46 239 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 TESMINQ9Y4I5 508 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 ZBTB11O95625 1053 aaPredicted RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 NR2F1P10589 423 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 POLR2IP36954 125 aaKnown RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 TSFMP43897 325 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms