RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 FCHO2Q0JRZ9 810 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 SNAPC1Q16533 368 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 TMEM220Q6QAJ8 160 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 KRT74Q7RTS7 529 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 ZNF367Q7RTV3 350 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 AMIGO1Q86WK6 493 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 TMEM25Q86YD3 366 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 LAS2Q8IYD9 372 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 Q8N402 240 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 POF1BQ8WVV4 589 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 TMCO6Q96DC7 493 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 TOX2Q96NM4 488 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 F2RL3Q96RI0 385 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 NXF2Q9GZY0 626 aaKnown RBP12.33□□□□□ -0.43
SNX1-201ENST00000261889 SLC23A1Q9UHI7 598 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 SLC9A8Q9Y2E8 581 aa12.33□□□□□ -0.43
SNX1-201ENST00000261889 FAM240BA0A1B0GVZ2 78 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 FAM25AB3EWG3 89 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 FAM25CB3EWG5 89 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 FAM25GB3EWG6 89 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 LANCL1O43813 399 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 SLC2A10O95528 541 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 CSTF2P33240 577 aaKnown RBP eCLIP12.33□□□□□ -0.441e-8■□□□□ 10
SNX1-201ENST00000261889 XCR1P46094 333 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 CSTF1Q05048 431 aaKnown RBP12.33□□□□□ -0.44
SNX1-201ENST00000261889 GINS1Q14691 196 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 QPRTQ15274 297 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 NDUFA5Q16718 116 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 DDI2Q5TDH0 399 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.33□□□□□ -0.442e-8■■■■■ 31.5
SNX1-201ENST00000261889 ADCK2Q7Z695 626 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 RASGEF1AQ8N9B8 481 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 SUN5Q8TC36 379 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 RNF170Q96K19 258 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 BCL7BQ9BQE9 202 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 HDHD2Q9H0R4 259 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 C1GALT1Q9NS00 363 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 CRNNQ9UBG3 495 aaPredicted RBP12.33□□□□□ -0.44
SNX1-201ENST00000261889 A0A0B4J203 849 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 TRBV5-4A0A0C4DH59 114 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 H3BSH0 61 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 SLC2A2P11168 524 aaPredicted RBP12.33□□□□□ -0.44
SNX1-201ENST00000261889 TIE1P35590 1138 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 BUD31P41223 144 aaPredicted RBP12.33□□□□□ -0.44
SNX1-201ENST00000261889 INPP1P49441 399 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 CLDN2P57739 230 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 ZNF284Q2VY69 593 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 USP45Q70EL2 814 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 DGLUCYQ7Z3D6 616 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 FLCNQ8NFG4 579 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 BBS1Q8NFJ9 593 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 OR8H1Q8NGG4 311 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 UBTD2Q8WUN7 234 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 ZNF480Q8WV37 535 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 ZG16BQ96DA0 208 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 OMA1Q96E52 524 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 RNF121Q9H920 327 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 FKBP14Q9NWM8 211 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 MRPL15Q9P015 296 aaKnown RBP12.33□□□□□ -0.44
SNX1-201ENST00000261889 PLEKHB1Q9UF11 243 aaPredicted RBP12.33□□□□□ -0.44
SNX1-201ENST00000261889 ATP6V1HQ9UI12 483 aa12.33□□□□□ -0.44
SNX1-201ENST00000261889 RGS13O14921 159 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 MAGEB4O15481 346 aaPredicted RBP12.32□□□□□ -0.44
SNX1-201ENST00000261889 SLC28A2O43868 658 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 B4GALT2O60909 372 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 PAHP00439 452 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 CYP2A6P11509 494 aaPredicted RBP12.32□□□□□ -0.44
SNX1-201ENST00000261889 SPINT3P49223 89 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 AP1S1P61966 158 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 FABP5Q01469 135 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 VEZF1Q14119 521 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 ARSIQ5FYB1 569 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 TRIQKQ629K1 86 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 FCRLBQ6BAA4 426 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 TCTN3Q6NUS6 607 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 SMARCD3Q6STE5 483 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 TPRG1Q6ZUI0 275 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 DENND6BQ8NEG7 585 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 FAM46DQ8NEK8 389 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 HMGB4Q8WW32 186 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 KLHL6Q8WZ60 621 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 PIGKQ92643 395 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 CLP1Q92989 425 aaKnown RBP12.32□□□□□ -0.44
SNX1-201ENST00000261889 TRMT61BQ9BVS5 477 aaKnown RBP12.32□□□□□ -0.44
SNX1-201ENST00000261889 MCOLN1Q9GZU1 580 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 WSB2Q9NYS7 404 aaPredicted RBP12.32□□□□□ -0.44
SNX1-201ENST00000261889 PCYT1BQ9Y5K3 369 aaPredicted RBP12.32□□□□□ -0.44
SNX1-201ENST00000261889 ZAR1LA6NP61 321 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 SCO2O43819 266 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 PQBP1O60828 265 aaKnown RBP12.32□□□□□ -0.44
SNX1-201ENST00000261889 EPHX1P07099 455 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 ATP6V1E1P36543 226 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 GSTM5P46439 218 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 MANFP55145 182 aaKnown RBP12.32□□□□□ -0.44
SNX1-201ENST00000261889 STXBP1P61764 594 aaKnown RBP12.32□□□□□ -0.44
SNX1-201ENST00000261889 WSCD2Q2TBF2 565 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 DCST1Q5T197 706 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 SLC30A6Q6NXT4 461 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 TUBA3EQ6PEY2 450 aa12.32□□□□□ -0.44
SNX1-201ENST00000261889 SLC39A5Q6ZMH5 540 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms