RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 GPR26Q8NDV2 337 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 DYNC2LI1Q8TCX1 351 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 PCDHGA8Q9Y5G5 932 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 GAPDHSO14556 408 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MEIS2O14770 477 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ARPC5O15511 151 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 C22orf31O95567 290 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ALPPL2P10696 532 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 RNASE10Q5GAN6 216 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM31Q5JXX7 168 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ATAT1Q5SQI0 421 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 NOL9Q5SY16 702 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 NUDT13Q86X67 352 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SNX29P2Q8IUI4 249 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SYNE4Q8N205 404 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 OR10K1Q8NGX5 313 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 NT5C3BQ969T7 300 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MFSD3Q96ES6 412 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF587Q96SQ5 575 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 AGO3Q9H9G7 860 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 EIF2B4Q9UI10 523 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 PSORS1C1Q9UIG5 152 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 STYXL1Q9Y6J8 313 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 FABP1P07148 127 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 EDNRAP25101 427 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 PRSS3P35030 304 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ALDH3B1P43353 468 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 AFF3P51826 1226 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 RSU1Q15404 277 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MICAQ29983 383 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 FAM171BQ6P995 826 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 GLIS3Q8NEA6 775 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 RGMAQ96B86 450 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM39BQ9GZU3 492 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 RPS10P5Q9NQ39 176 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 DZANK1Q9NVP4 752 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 IKZF2Q9UKS7 526 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 RNF11Q9Y3C5 154 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TRDV1A0A1B0GX56 115 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TVP23AA6NH52 213 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 A8MV72 311 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TOX4O94842 621 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 LGI1O95970 557 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 POU3F3P20264 500 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 UQCRC2P22695 453 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 NMBRP28336 390 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SEC61A1P61619 476 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SNRPGP62308 76 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MS4A2Q01362 244 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 INCA1Q0VD86 236 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 KRBOX4Q5JUW0 171 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 JOSD2Q8TAC2 188 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 OR52A5Q9H2C5 316 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 LDAHQ9H6V9 325 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CFAP97Q9P2B7 532 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MED16Q9Y2X0 877 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ACTL7AQ9Y615 435 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SGK494L7N484 410 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 HTR1AP08908 422 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 PTAFRP25105 342 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 GNALP38405 381 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MAGEA11P43364 429 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CLCN7P51798 805 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SRPXP78539 464 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SELENBP1Q13228 472 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CHIT1Q13231 466 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MFSD9Q8NBP5 474 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 IL31RAQ8NI17 732 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 BCL7CQ8WUZ0 217 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SORCS1Q8WY21 1168 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TBC1D20Q96BZ9 403 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TAAR1Q96RJ0 339 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ULBP1Q9BZM6 244 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 DKKL1Q9UK85 242 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 STRAPQ9Y3F4 350 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 AIPO00170 330 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CACNG3O60359 315 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 BMP8BP34820 402 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 S100A10P60903 97 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 STXBP1P61764 594 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SLC7A9P82251 487 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 PLK5Q496M5 336 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 KCTD18Q6PI47 426 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 BMP8AQ7Z5Y6 402 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 KLHDC1Q8N7A1 406 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 EDAQ92838 391 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SLC35B4Q969S0 331 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CCDC3Q9BQI4 270 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 NIFKQ9BYG3 293 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 BCO2Q9BYV7 579 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 XYLT2Q9H1B5 865 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TCEAL2Q9H3H9 227 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MYH7BA7E2Y1 1941 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 A0A1B0GUH1 482 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CBX4O00257 560 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 POP7O75817 140 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CELP19835 753 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SNCAP37840 140 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 NUDT6P53370 316 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 OR4D2P58180 307 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms