RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CNPY1Q3B7I2 92 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 UNC50Q53HI1 259 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 RAB3CQ96E17 227 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 MAGEB18Q96M61 343 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 CASD1Q96PB1 797 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 LSG1Q9H089 658 aaKnown RBP2.62□□□□□ -1.99
CD44-239ENST00000639002 IMPAD1Q9NX62 359 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 SPG21Q9NZD8 308 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 GPR132Q9UNW8 380 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 H0YIG0 161 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 CTDSPLO15194 276 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 SYT7O43581 403 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 KIAA0513O60268 411 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 ZNF861PO60384 105 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 LETM1O95202 739 aaPredicted RBP2.61□□□□□ -1.99
CD44-239ENST00000639002 SIX3O95343 332 aaPredicted RBP2.61□□□□□ -1.99
CD44-239ENST00000639002 GJB5O95377 273 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 SBK2P0C263 348 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 PRKAR2BP31323 418 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 DCAF12Q5T6F0 453 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 TRAT1Q6PIZ9 186 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 C2orf66Q6UXQ4 117 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 CYP4V2Q6ZWL3 525 aaPredicted RBP2.61□□□□□ -1.99
CD44-239ENST00000639002 DZIP1Q86YF9 867 aaKnown RBP2.61□□□□□ -1.99
CD44-239ENST00000639002 LAX1Q8IWV1 398 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 ARL14Q8N4G2 192 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 KIAA0895Q8NCT3 520 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.61□□□□□ -1.99
CD44-239ENST00000639002 GANCQ8TET4 914 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 CKAP2Q8WWK9 683 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 CRYGNQ8WXF5 182 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 SLCO4A1Q96BD0 722 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 SNRNP40Q96DI7 357 aaKnown RBP2.61□□□□□ -1.99
CD44-239ENST00000639002 SIPA1Q96FS4 1042 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 TECTBQ96PL2 329 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 C17orf62Q9BQA9 187 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 TAS2R16Q9NYV7 291 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 SENP1Q9P0U3 644 aa2.61□□□□□ -1.99
CD44-239ENST00000639002 MTF2Q9Y483 593 aaPredicted RBP2.61□□□□□ -1.99
CD44-239ENST00000639002 FGD5Q6ZNL6 1462 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 FAM231BA6NCW3 169 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 B4DXG7 233 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 KBTBD13C9JR72 458 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 ST8SIA3O43173 380 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 STAM2O75886 525 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 PRAMEF12O95522 483 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 APBB3O95704 486 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 IGHV3-9P01782 118 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 KRT20P35900 424 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 IER3P46695 156 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 EFNA3P52797 238 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 GNB2P62879 340 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 RALBP1Q15311 655 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 ODF2Q5BJF6 829 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 CELF3Q5SZQ8 465 aaKnown RBP2.6□□□□□ -1.99
CD44-239ENST00000639002 PODNL1Q6PEZ8 512 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 OTOAQ7RTW8 1153 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 ZNF677Q86XU0 584 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 CCDC197Q8NCU1 140 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 DNASE1L2Q92874 299 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 FAM122AQ96E09 287 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 FERMT1Q9BQL6 677 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 ELL3Q9HB65 397 aaPredicted RBP2.6□□□□□ -1.99
CD44-239ENST00000639002 SLCO1C1Q9NYB5 712 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 MIS18AQ9NYP9 233 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 PLEK2Q9NYT0 353 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 PRODH2Q9UF12 536 aa2.6□□□□□ -1.99
CD44-239ENST00000639002 ZNFX1Q9P2E3 1918 aaKnown RBP2.6□□□□□ -1.99
CD44-239ENST00000639002 EFCAB7A8K855 629 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 A8MX80 341 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 ARHGDIAP52565 204 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 WNT4P56705 351 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 RIPPLY3P57055 190 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 MEF2DQ14814 521 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 SPHARQ15513 63 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 MICAQ29983 383 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 WSCD2Q2TBF2 565 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 ITIH5Q86UX2 942 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 C17orf64Q86WR6 236 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 APOBEC3FQ8IUX4 373 aaKnown RBP2.59□□□□□ -1.99
CD44-239ENST00000639002 Q8N9G6 341 aaPredicted RBP2.59□□□□□ -1.99
CD44-239ENST00000639002 UXS1Q8NBZ7 420 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 OR2L5Q8NG80 312 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 OR13F1Q8NGS4 319 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 CNDP2Q96KP4 475 aaKnown RBP2.59□□□□□ -1.99
CD44-239ENST00000639002 SSX3Q99909 188 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 EBF4Q9BQW3 602 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 ZNF559Q9BR84 538 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 KLRF1Q9NZS2 232 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 CA5BQ9Y2D0 317 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 TTLL3Q9Y4R7 772 aa2.59□□□□□ -1.99
CD44-239ENST00000639002 ACEP12821 1306 aa2.59□□□□□ -2
CD44-239ENST00000639002 SH3PXD2BA1X283 911 aa2.58□□□□□ -2
CD44-239ENST00000639002 MAGEB16A2A368 324 aa2.58□□□□□ -2
CD44-239ENST00000639002 RSPH10B2B2RC85 870 aa2.58□□□□□ -2
CD44-239ENST00000639002 PLOD3O60568 738 aa2.58□□□□□ -2
CD44-239ENST00000639002 ANXA9O76027 345 aa2.58□□□□□ -2
CD44-239ENST00000639002 RLN1P04808 185 aa2.58□□□□□ -2
CD44-239ENST00000639002 LDHCP07864 332 aa2.58□□□□□ -2
CD44-239ENST00000639002 RSPH10BP0C881 870 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms