RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 NME2P22392 152 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 SERPINB4P48594 390 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 TNFRSF17Q02223 184 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 CLCQ05315 142 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 LIPMQ5VYY2 423 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 C18orf63Q68DL7 685 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 MILR1Q7Z6M3 343 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 ANKRD42Q8N9B4 389 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 OR4F6Q8NGB9 312 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 OR8K3Q8NH51 312 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 TRPC4APQ8TEL6 797 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 LYARQ9NX58 379 aaKnown RBP17.9■□□□□ 0.46
CLN3-260ENST00000637578 ICE1Q9Y2F5 2266 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 DOPEY1Q5JWR5 2465 aa17.89■□□□□ 0.46
CLN3-260ENST00000637578 SPTBN1Q01082 2364 aaKnown RBP17.89■□□□□ 0.45
CLN3-260ENST00000637578 ITGA10O75578 1167 aa17.89■□□□□ 0.45
CLN3-260ENST00000637578 OTCP00480 354 aa17.89■□□□□ 0.45
CLN3-260ENST00000637578 ARL1P40616 181 aaPredicted RBP17.89■□□□□ 0.45
CLN3-260ENST00000637578 ID2Q02363 134 aa17.89■□□□□ 0.45
CLN3-260ENST00000637578 GALNTL5Q7Z4T8 443 aa17.89■□□□□ 0.45
CLN3-260ENST00000637578 THAP3Q8WTV1 239 aaPredicted RBP17.89■□□□□ 0.45
CLN3-260ENST00000637578 MTFMTQ96DP5 389 aaKnown RBP17.89■□□□□ 0.45
CLN3-260ENST00000637578 PKNOX2Q96KN3 472 aa17.89■□□□□ 0.45
CLN3-260ENST00000637578 FRMD6Q96NE9 622 aa17.89■□□□□ 0.45
CLN3-260ENST00000637578 ACBD3Q9H3P7 528 aa17.89■□□□□ 0.45
CLN3-260ENST00000637578 GSTO2Q9H4Y5 243 aa17.89■□□□□ 0.45
CLN3-260ENST00000637578 ZNF225Q9UK10 706 aa17.89■□□□□ 0.45
CLN3-260ENST00000637578 YARS2Q9Y2Z4 477 aaKnown RBP17.89■□□□□ 0.45
CLN3-260ENST00000637578 A0A1W2PR48 441 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 C17orf105B2RV13 164 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 TRIM13O60858 407 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 BPGMP07738 259 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 FAM58BPP0C7Q3 252 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 DHRS4L1P0CG22 281 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 TLX1P31314 330 aaPredicted RBP17.88■□□□□ 0.45
CLN3-260ENST00000637578 STT3AP46977 705 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 KCNK10P57789 538 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 SRSF11Q05519 484 aaKnown RBP17.88■□□□□ 0.45
CLN3-260ENST00000637578 LETMD1Q6P1Q0 360 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 FRMD7Q6ZUT3 714 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 NUDT13Q86X67 352 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 OR4N5Q8IXE1 308 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 ZNF321PQ8N8H1 164 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 SLC2A12Q8TD20 617 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 ZNF721Q8TF20 911 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 GATA5Q9BWX5 397 aaPredicted RBP17.88■□□□□ 0.45
CLN3-260ENST00000637578 MYOTQ9UBF9 498 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 ADAM29Q9UKF5 820 aa17.88■□□□□ 0.45
CLN3-260ENST00000637578 HMGB1P1B2RPK0 211 aaPredicted RBP17.87■□□□□ 0.45
CLN3-260ENST00000637578 BUD31P41223 144 aaPredicted RBP17.87■□□□□ 0.45
CLN3-260ENST00000637578 FOLH1Q04609 750 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 LCP2Q13094 533 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 IFT88Q13099 833 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 CFAP157Q5JU67 520 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 GFRALQ6UXV0 394 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 HSDL2Q6YN16 418 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 RELTQ969Z4 430 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 ZNF382Q96SR6 550 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 SEC14L3Q9UDX4 400 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 LRRTM2O43300 516 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 PRKRAO75569 313 aaKnown RBP17.87■□□□□ 0.45
CLN3-260ENST00000637578 UNC5CO95185 931 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 GPR75O95800 540 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 MLYCDO95822 493 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 IGKV3-11P04433 115 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 TNNI3P19429 210 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 SSR4P51571 173 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 SLC18A1P54219 525 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 RNF4P78317 190 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 ASPHQ12797 758 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 MAPKAPK3Q16644 382 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 TTC19Q6DKK2 380 aaPredicted RBP17.87■□□□□ 0.45
CLN3-260ENST00000637578 CYP20A1Q6UW02 462 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 ZCCHC23Q6ZST2 131 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.87■□□□□ 0.45
CLN3-260ENST00000637578 SIAH3Q8IW03 269 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 GPALPP1Q8IXQ4 340 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 FAM98AQ8NCA5 519 aaKnown RBP17.87■□□□□ 0.45
CLN3-260ENST00000637578 MGARPQ8TDB4 240 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 TMEM125Q96AQ2 219 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 RBM18Q96H35 190 aaKnown RBP17.87■□□□□ 0.45
CLN3-260ENST00000637578 SENP5Q96HI0 755 aaPredicted RBP17.87■□□□□ 0.45
CLN3-260ENST00000637578 OR8D2Q9GZM6 311 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 FARSBQ9NSD9 589 aaKnown RBP17.87■□□□□ 0.45
CLN3-260ENST00000637578 PLEKHB1Q9UF11 243 aaPredicted RBP17.87■□□□□ 0.45
CLN3-260ENST00000637578 TRPS1Q9UHF7 1281 aa17.87■□□□□ 0.45
CLN3-260ENST00000637578 WDR91A4D1P6 747 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 WASHC1A8K0Z3 465 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 OR2J2O76002 312 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 COX7A2P14406 83 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 WDR4P57081 412 aaKnown RBP17.86■□□□□ 0.45
CLN3-260ENST00000637578 NAA20P61599 178 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.86■□□□□ 0.45
CLN3-260ENST00000637578 KRTCAP3Q53RY4 240 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 FAM219BQ5XKK7 198 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 C16orf47Q6ZP98 133 aaPredicted RBP17.86■□□□□ 0.45
CLN3-260ENST00000637578 DGAT2L6Q6ZPD8 337 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 NUDCD3Q8IVD9 361 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 ST13P4Q8IZP2 240 aaPredicted RBP17.86■□□□□ 0.45
CLN3-260ENST00000637578 METTL4Q8N3J2 472 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms