RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 GSTM5P46439 218 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 MLLT10P55197 1068 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 SRSF1Q07955 248 aaKnown RBP eCLIP16.91■□□□□ 0.3
CLN3-239ENST00000628023 Q0VFX4 171 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 MYBPC3Q14896 1274 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 ELAVL1Q15717 326 aaKnown RBP16.91■□□□□ 0.3
CLN3-239ENST00000628023 ATP6AP1LQ52LC2 224 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 PLAG1Q6DJT9 500 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 NOXRED1Q6NXP6 359 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 GALNT18Q6P9A2 607 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 RIPOR1Q6ZS17 1223 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 Q6ZSR9 355 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 TMEM132CQ8N3T6 1108 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 C16orf78Q8WTQ4 265 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 TUBGCP3Q96CW5 907 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 METTL2AQ96IZ6 378 aaKnown RBP16.91■□□□□ 0.3
CLN3-239ENST00000628023 IMMP1LQ96LU5 166 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 SIRT5Q9NXA8 310 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 VPS4AQ9UN37 437 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 DLGAP4Q9Y2H0 992 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 CCL27Q9Y4X3 112 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 PCDHA9Q9Y5H5 950 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 CLDN16Q9Y5I7 305 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 CLCA3PQ9Y6N3 262 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 ATP6AP2A0A1C7CYW4 349 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 NPIPB8E9PQR5 432 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 LSM1O15116 133 aaKnown RBP16.9■□□□□ 0.3
CLN3-239ENST00000628023 PGRMC2O15173 223 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 DYRK3O43781 588 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 SNNO75324 88 aaPredicted RBP16.9■□□□□ 0.3
CLN3-239ENST00000628023 ATP6AP2O75787 350 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 CEACAM4O75871 244 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 GPR75O95800 540 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 ALOX15P16050 662 aaPredicted RBP16.9■□□□□ 0.3
CLN3-239ENST00000628023 CD97P48960 835 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 SLC26A5P58743 744 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 BIKQ13323 160 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 HEPACAMQ14CZ8 416 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 TERF2Q15554 542 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 XKR7Q5GH72 579 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 VWA5B1Q5TIE3 1220 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 MMP21Q8N119 569 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 OR14A16Q8NHC5 309 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 BRIX1Q8TDN6 353 aaKnown RBP16.9■□□□□ 0.3
CLN3-239ENST00000628023 ZNF75CPQ92670 426 aaPredicted RBP16.9■□□□□ 0.3
CLN3-239ENST00000628023 DAZLQ92904 295 aaKnown RBP16.9■□□□□ 0.3
CLN3-239ENST00000628023 UCN3Q969E3 161 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 KLHL29Q96CT2 875 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 RBM18Q96H35 190 aaKnown RBP16.9■□□□□ 0.3
CLN3-239ENST00000628023 PELOQ9BRX2 385 aaKnown RBP16.9■□□□□ 0.3
CLN3-239ENST00000628023 NUDT9Q9BW91 350 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 KCNK13Q9HB14 408 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 MED4Q9NPJ6 270 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 PNPOQ9NVS9 261 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 C5AR2Q9P296 337 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 VTI1BQ9UEU0 232 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 MARCOQ9UEW3 520 aaPredicted RBP16.9■□□□□ 0.3
CLN3-239ENST00000628023 HAO1Q9UJM8 370 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 PSME2Q9UL46 239 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 TMED5Q9Y3A6 229 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 ZNF451Q9Y4E5 1061 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 PCDHGB7Q9Y5F8 929 aa16.9■□□□□ 0.3
CLN3-239ENST00000628023 CYSRT1A8MQ03 144 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 C17orf105B2RV13 164 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 KLF11O14901 512 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 ATP8B1O43520 1251 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 PEX11AO75192 247 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 ERAL1O75616 437 aaKnown RBP16.89■□□□□ 0.29
CLN3-239ENST00000628023 JUNP05412 331 aaKnown RBP16.89■□□□□ 0.29
CLN3-239ENST00000628023 KITP10721 976 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 ITGAMP11215 1152 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 MAPK1P28482 360 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 STT3AP46977 705 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 SOX8P57073 446 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 C6orf163Q5TEZ5 329 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 AGAP7PQ5VUJ5 663 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 JMJD6Q6NYC1 403 aaPredicted RBP16.89■□□□□ 0.29
CLN3-239ENST00000628023 SLC48A1Q6P1K1 146 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 SIRT6Q8N6T7 355 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 FNDC5Q8NAU1 212 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 OR4K14Q8NGD5 310 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 DNAJB14Q8TBM8 379 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 M1APQ8TC57 530 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 C11orf24Q96F05 449 aaPredicted RBP16.89■□□□□ 0.29
CLN3-239ENST00000628023 C3orf30Q96M34 536 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 AGAP4Q96P64 663 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 NUF2Q9BZD4 464 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 MMP25Q9NPA2 562 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 MIEF1Q9NQG6 463 aa16.89■□□□□ 0.29
CLN3-239ENST00000628023 CLEC18AA5D8T8 446 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 WASHC1A8K0Z3 465 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 DRD2P14416 443 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 IGLV3-21P80748 117 aaPredicted RBP16.88■□□□□ 0.29
CLN3-239ENST00000628023 OCRLQ01968 901 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 C2orf80Q0P641 193 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 KIAA0040Q15053 153 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 RFTN2Q52LD8 501 aaPredicted RBP16.88■□□□□ 0.29
CLN3-239ENST00000628023 CLEC18BQ6UXF7 455 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 IKBIPQ70UQ0 350 aa16.88■□□□□ 0.29
CLN3-239ENST00000628023 HPS6Q86YV9 775 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms