RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 A0A1W2PS29 197 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 CDC14CA4D256 554 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 E9PBE3 544 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 KLHL41O60662 606 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 LRATO95237 230 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 PRKAR1AP10644 381 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 COX6A1P12074 109 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 IDO1P14902 403 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 PCSK2P16519 638 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 HPCAL1P37235 193 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 CLDN8P56748 225 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 TMPRSS3P57727 454 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 STX4Q12846 297 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 ATP1A4Q13733 1029 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 GSTA3Q16772 222 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 PRSS53Q2L4Q9 553 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 CPZQ66K79 652 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 CPEB2Q7Z5Q1 589 aaKnown RBP18.46■□□□□ 0.55
UPF3A-211ENST00000618700 TICAM1Q8IUC6 712 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 FAM9CQ8IZT9 166 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 ZSCAN1Q8NBB4 408 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 C7orf57Q8NEG2 295 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 OR4K14Q8NGD5 310 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 GFM2Q969S9 779 aaKnown RBP18.46■□□□□ 0.55
UPF3A-211ENST00000618700 MTERF3Q96E29 417 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 MARK4Q96L34 752 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 ZNF681Q96N22 645 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 WDR77Q9BQA1 342 aaPredicted RBP18.46■□□□□ 0.55
UPF3A-211ENST00000618700 TMEM120AQ9BXJ8 343 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 ALOXE3Q9BYJ1 711 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 MIEF1Q9NQG6 463 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 ATP6V1HQ9UI12 483 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 UTS2RQ9UKP6 389 aa18.46■□□□□ 0.55
UPF3A-211ENST00000618700 IGHV1-45A0A0A0MS14 117 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 SCAMP2O15127 329 aaKnown RBP18.45■□□□□ 0.54
UPF3A-211ENST00000618700 UBDO15205 165 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 GPR37O15354 613 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 AKAP10O43572 662 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 SHOX2O60902 331 aaPredicted RBP18.45■□□□□ 0.54
UPF3A-211ENST00000618700 PRPS1L1P21108 318 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 PIK3R1P27986 724 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 MRPL19P49406 292 aaKnown RBP18.45■□□□□ 0.54
UPF3A-211ENST00000618700 OR4D2P58180 307 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 EEF1A2Q05639 463 aaKnown RBP18.45■□□□□ 0.54
UPF3A-211ENST00000618700 ACTN3Q08043 901 aaPredicted RBP18.45■□□□□ 0.54
UPF3A-211ENST00000618700 BIKQ13323 160 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 PCOLCEQ15113 449 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 CEBPEQ15744 281 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 ZNF385BQ569K4 471 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 SFT2D3Q587I9 215 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 KRTCAP2Q8N6L1 136 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 SNRNP27Q8WVK2 155 aaKnown RBP18.45■□□□□ 0.54
UPF3A-211ENST00000618700 C10orf82Q8WW14 230 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 THAP4Q8WY91 577 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 KLHL29Q96CT2 875 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 CNRIP1Q96F85 164 aaPredicted RBP18.45■□□□□ 0.54
UPF3A-211ENST00000618700 ZNF700Q9H0M5 742 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 CPNE5Q9HCH3 593 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 ADAP2Q9NPF8 381 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 SLC35C2Q9NQQ7 365 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 SDR39U1Q9NRG7 319 aaPredicted RBP18.45■□□□□ 0.54
UPF3A-211ENST00000618700 P4HTMQ9NXG6 502 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 PSME2Q9UL46 239 aa18.45■□□□□ 0.54
UPF3A-211ENST00000618700 IGHV3-20A0A0C4DH32 117 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 MYOCOSA0A1B0GUC4 107 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 ERAL1O75616 437 aaKnown RBP18.44■□□□□ 0.54
UPF3A-211ENST00000618700 SLC35E2P0CK97 266 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 CPMP14384 443 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 RPL3P39023 403 aaKnown RBP18.44■□□□□ 0.54
UPF3A-211ENST00000618700 STT3AP46977 705 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 ARFIP2P53365 341 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 PLIN5Q00G26 463 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 VAC14Q08AM6 782 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 ELAVL1Q15717 326 aaKnown RBP18.44■□□□□ 0.54
UPF3A-211ENST00000618700 ZNF750Q32MQ0 723 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 PDCD4Q53EL6 469 aaKnown RBP18.44■□□□□ 0.54
UPF3A-211ENST00000618700 R3HCC1LQ7Z5L2 792 aaKnown RBP18.44■□□□□ 0.54
UPF3A-211ENST00000618700 CAMKMTQ7Z624 323 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 ST13P4Q8IZP2 240 aaPredicted RBP18.44■□□□□ 0.54
UPF3A-211ENST00000618700 EXOSC8Q96B26 276 aaKnown RBP18.44■□□□□ 0.54
UPF3A-211ENST00000618700 VPS50Q96JG6 964 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 PELOQ9BRX2 385 aaKnown RBP18.44■□□□□ 0.54
UPF3A-211ENST00000618700 NSRP1Q9H0G5 558 aaKnown RBP18.44■□□□□ 0.54
UPF3A-211ENST00000618700 FBXL4Q9UKA2 621 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 ADAM21Q9UKJ8 722 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 POLHQ9Y253 713 aa18.44■□□□□ 0.54
UPF3A-211ENST00000618700 GABRR3A8MPY1 467 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 HPP00738 406 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 PORP16435 677 aaPredicted RBP18.43■□□□□ 0.54
UPF3A-211ENST00000618700 XKP51811 444 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 DUSP2Q05923 314 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 SF3A3Q12874 501 aaKnown RBP eCLIP18.43■□□□□ 0.54
UPF3A-211ENST00000618700 TERF2Q15554 542 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 MPEG1Q2M385 716 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 ANKRD26P1Q6NSI1 321 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 FAM180BQ6P0A1 224 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 SPATA21Q7Z572 469 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 SAMD14Q8IZD0 417 aaPredicted RBP18.43■□□□□ 0.54
UPF3A-211ENST00000618700 NUDT8Q8WV74 236 aa18.43■□□□□ 0.54
UPF3A-211ENST00000618700 WNT2BQ93097 391 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms