RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 BICRALQ6AI39 1079 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 CNIH2Q6PI25 160 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 ARL9Q6T311 187 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 ZNF783Q6ZMS7 281 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 ZNF438Q7Z4V0 828 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 HSD11B1LQ7Z5J1 315 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 YIPF7Q8N8F6 280 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 OR10H4Q8NGA5 316 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 ZBED6CLQ96FA7 236 aaPredicted RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 ZIC5Q96T25 663 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 TTTY10Q9BZA0 68 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 RHBGQ9H310 441 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 IMP3Q9NV31 184 aaKnown RBP12.01□□□□□ -0.49
LIG1-221ENST00000613670 ITM2BQ9Y287 266 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 NAALAD2Q9Y3Q0 740 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 SNX11Q9Y5W9 270 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 RLFQ13129 1914 aa12.01□□□□□ -0.49
LIG1-221ENST00000613670 BRWD3Q6RI45 1802 aa12□□□□□ -0.49
LIG1-221ENST00000613670 TRBV5-3A0A0A0MS03 114 aa12□□□□□ -0.49
LIG1-221ENST00000613670 FAM170BA6NMN3 283 aa12□□□□□ -0.49
LIG1-221ENST00000613670 TMEM189-UBE2V1I3L0A0 370 aa12□□□□□ -0.49
LIG1-221ENST00000613670 PI15O43692 258 aa12□□□□□ -0.49
LIG1-221ENST00000613670 POP7O75817 140 aaKnown RBP12□□□□□ -0.49
LIG1-221ENST00000613670 ADAP00813 363 aa12□□□□□ -0.49
LIG1-221ENST00000613670 PRG2P13727 222 aa12□□□□□ -0.49
LIG1-221ENST00000613670 FNDC3BQ53EP0 1204 aaKnown RBP12□□□□□ -0.49
LIG1-221ENST00000613670 SLC35F1Q5T1Q4 408 aa12□□□□□ -0.49
LIG1-221ENST00000613670 B3GLCTQ6Y288 498 aa12□□□□□ -0.49
LIG1-221ENST00000613670 RBM45Q8IUH3 476 aaKnown RBP12□□□□□ -0.49
LIG1-221ENST00000613670 UBQLNLQ8IYU4 475 aa12□□□□□ -0.49
LIG1-221ENST00000613670 IL17RDQ8NFM7 739 aa12□□□□□ -0.49
LIG1-221ENST00000613670 C7orf34Q96L11 122 aa12□□□□□ -0.49
LIG1-221ENST00000613670 SNX18Q96RF0 628 aa12□□□□□ -0.49
LIG1-221ENST00000613670 SPATA9Q9BWV2 254 aa12□□□□□ -0.49
LIG1-221ENST00000613670 SLC6A16Q9GZN6 736 aa12□□□□□ -0.49
LIG1-221ENST00000613670 EXTL2Q9UBQ6 330 aa12□□□□□ -0.49
LIG1-221ENST00000613670 PCDHGA2Q9Y5H1 932 aa12□□□□□ -0.49
LIG1-221ENST00000613670 H7BY64 318 aa12□□□□□ -0.49
LIG1-221ENST00000613670 PGRMC2O15173 223 aa12□□□□□ -0.49
LIG1-221ENST00000613670 NCBP2P52298 156 aaKnown RBP eCLIP12□□□□□ -0.49
LIG1-221ENST00000613670 ZNF385BQ569K4 471 aa12□□□□□ -0.49
LIG1-221ENST00000613670 METTL2BQ6P1Q9 378 aaKnown RBP12□□□□□ -0.49
LIG1-221ENST00000613670 MMP21Q8N119 569 aa12□□□□□ -0.49
LIG1-221ENST00000613670 CBARPQ8N350 705 aaPredicted RBP12□□□□□ -0.49
LIG1-221ENST00000613670 SYT14Q8NB59 555 aa12□□□□□ -0.49
LIG1-221ENST00000613670 LRRC20Q8TCA0 184 aa12□□□□□ -0.49
LIG1-221ENST00000613670 SMG7Q92540 1137 aaKnown RBP12□□□□□ -0.49
LIG1-221ENST00000613670 PRAP1Q96NZ9 151 aa12□□□□□ -0.49
LIG1-221ENST00000613670 PITX2Q99697 317 aa12□□□□□ -0.49
LIG1-221ENST00000613670 TAS2R7Q9NYW3 318 aa12□□□□□ -0.49
LIG1-221ENST00000613670 ZFR2Q9UPR6 939 aaKnown RBP12□□□□□ -0.49
LIG1-221ENST00000613670 RNASET2O00584 256 aaKnown RBP12□□□□□ -0.49
LIG1-221ENST00000613670 NCR1O76036 304 aa12□□□□□ -0.49
LIG1-221ENST00000613670 BMP7P18075 431 aa12□□□□□ -0.49
LIG1-221ENST00000613670 VIPR1P32241 457 aa12□□□□□ -0.49
LIG1-221ENST00000613670 RNF144AP50876 292 aaPredicted RBP12□□□□□ -0.49
LIG1-221ENST00000613670 CDK10Q15131 360 aa12□□□□□ -0.49
LIG1-221ENST00000613670 OR5D16Q8NGK9 328 aa12□□□□□ -0.49
LIG1-221ENST00000613670 RAD51AP1Q96B01 352 aa12□□□□□ -0.49
LIG1-221ENST00000613670 TTLL2Q9BWV7 592 aa12□□□□□ -0.49
LIG1-221ENST00000613670 MARCH5Q9NX47 278 aa12□□□□□ -0.49
LIG1-221ENST00000613670 CACNA1CQ13936 2221 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 YY2O15391 372 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 CSO75390 466 aaKnown RBP11.99□□□□□ -0.49
LIG1-221ENST00000613670 HSD3B1P14060 373 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 UQCRC2P22695 453 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 CXCR2P25025 360 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 HSD3B2P26439 372 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 HSDL2Q6YN16 418 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 MTSS1LQ765P7 747 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 GLYATL1Q969I3 302 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 ZSCAN5AQ9BUG6 496 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 CHIAQ9BZP6 476 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 ACER3Q9NUN7 267 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 MCUBQ9NWR8 336 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 CNOT2Q9NZN8 540 aaKnown RBP11.99□□□□□ -0.49
LIG1-221ENST00000613670 PCDH10Q9P2E7 1040 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 P2RX2Q9UBL9 471 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 INSL5Q9Y5Q6 135 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 FEZF1A0PJY2 475 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 SLC16A5O15375 505 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 HPGDSO60760 199 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 TOXO94900 526 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 SEMA3DO95025 777 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 UQCRC1P31930 480 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 GGTA1PQ4G0N0 100 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 ARHGAP15Q53QZ3 475 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 VN1R5Q7Z5H4 357 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 PDZD3Q86UT5 571 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 TMEM25Q86YD3 366 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 OR51G2Q8NGK0 314 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 PCNPQ8WW12 178 aaKnown RBP11.99□□□□□ -0.49
LIG1-221ENST00000613670 FAIM2Q9BWQ8 316 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 GABARAPL3Q9BY60 117 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 MBD1Q9UIS9 605 aaPredicted RBP11.99□□□□□ -0.49
LIG1-221ENST00000613670 TMEM98Q9Y2Y6 226 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 A3GALT2U3KPV4 340 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 MEN1O00255 615 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 FAAHO00519 579 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 HOXC11O43248 304 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms