RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	TM4SF19	Q96DZ7	209 aa		11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	THAP11	Q96EK4	314 aa		11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	NSL1	Q96IY1	281 aa		11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	METTL2A	Q96IZ6	378 aa	Known RBP	11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	EGLN2	Q96KS0	407 aa		11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	BARD1	Q99728	777 aa	Known RBP	11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	CENPK	Q9BS16	269 aa		11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	ZNF717	Q9BY31	904 aa	Predicted RBP	11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	SLC6A16	Q9GZN6	736 aa		11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	REXO4	Q9GZR2	422 aa	Known RBP	11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	AGPAT4	Q9NRZ5	378 aa		11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	PCDHGA10	Q9Y5H3	936 aa		11.93	□□□□□ -0.5
UPF1-208	ENST00000600012	GNG14	A0A1W2PPG7	69 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	ERI3	O43414	337 aa	Known RBP	11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	EED	O75530	441 aa	Known RBP	11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	SLC22A3	O75751	556 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	KLHL18	O94889	574 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	ANXA4	P09525	319 aa	Predicted RBP	11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	CAPN3	P20807	821 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	CALB2	P22676	271 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	MMP11	P24347	488 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	ITGA3	P26006	1051 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	TPP2	P29144	1249 aa	Predicted RBP	11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	PRDX6	P30041	224 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	SSR2	P43308	183 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	ZFP36L2	P47974	494 aa	Known RBP	11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	ARSF	P54793	590 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	RAB8A	P61006	207 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	NCALD	P61601	193 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	STXBP1	P61764	594 aa	Known RBP	11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	IRX1	P78414	480 aa	Predicted RBP	11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	RELA	Q04206	551 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	PWP1	Q13610	501 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	ADPRM	Q3LIE5	342 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	TMEM35A	Q53FP2	167 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	ZNF793	Q6ZN11	406 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	YTHDF3	Q7Z739	585 aa	Known RBP	11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	NUDT13	Q86X67	352 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	CSNK1A1L	Q8N752	337 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	CAMKV	Q8NCB2	501 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	GFM2	Q969S9	779 aa	Known RBP	11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	WDR77	Q9BQA1	342 aa	Predicted RBP	11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	DPY30	Q9C005	99 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	MRGBP	Q9NV56	204 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	SIRT5	Q9NXA8	310 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	AHSP	Q9NZD4	102 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	MCM8	Q9UJA3	840 aa		11.92	□□□□□ -0.5
UPF1-208	ENST00000600012	NUP214	P35658	2090 aa	Predicted RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012		A0A1B0GX78	115 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	MASP2	O00187	686 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	AKAP10	O43572	662 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	UNC5C	O95185	931 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	ALB	P02768	609 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	ZNF888	P0CJ79	500 aa	Predicted RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	PIM1	P11309	404 aa	Predicted RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	ALAS2	P22557	587 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	JAK1	P23458	1154 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	GCGR	P47871	477 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	POLR2J	P52435	117 aa	Known RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	CLDN8	P56748	225 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	FOXL2	P58012	376 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	ZNF763	Q0D2J5	394 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	CYLC2	Q14093	348 aa	Predicted RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	MAPRE2	Q15555	327 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	TIGD2	Q4W5G0	525 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	ZC3H12B	Q5HYM0	836 aa	Known RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	CCNYL2	Q5T2Q4	361 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	IRAK1BP1	Q5VVH5	260 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	REP15	Q6BDI9	236 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	GALNT18	Q6P9A2	607 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	TRIM40	Q6P9F5	258 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	ABHD17C	Q6PCB6	329 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	BLOC1S3	Q6QNY0	202 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	MCAT	Q8IVS2	390 aa	Known RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	PARP9	Q8IXQ6	854 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	ST6GALNAC3	Q8NDV1	305 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	OR2L5	Q8NG80	312 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	FBXO27	Q8NI29	283 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	RP9	Q8TA86	221 aa	Known RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	UTP15	Q8TED0	518 aa	Known RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	C16orf78	Q8WTQ4	265 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	GAL3ST3	Q96A11	431 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	RCN3	Q96D15	328 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	CMTM5	Q96DZ9	223 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	ZBTB18	Q99592	522 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	WDR54	Q9H977	334 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	ZBTB20	Q9HC78	741 aa	Predicted RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	SLC22A11	Q9NSA0	550 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	FBXL4	Q9UKA2	621 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	NTNG1	Q9Y2I2	539 aa		11.91	□□□□□ -0.5
UPF1-208	ENST00000600012	MRPS2	Q9Y399	296 aa	Known RBP	11.91	□□□□□ -0.5
UPF1-208	ENST00000600012		A0A0A6YYD5	115 aa		11.9	□□□□□ -0.5
UPF1-208	ENST00000600012	ARHGAP10	A1A4S6	786 aa		11.9	□□□□□ -0.5
UPF1-208	ENST00000600012	FAM234B	A2RU67	622 aa		11.9	□□□□□ -0.5
UPF1-208	ENST00000600012	ANKRD65	E5RJM6	399 aa		11.9	□□□□□ -0.5
UPF1-208	ENST00000600012	TMPRSS11D	O60235	418 aa		11.9	□□□□□ -0.5
UPF1-208	ENST00000600012	ONECUT2	O95948	504 aa		11.9	□□□□□ -0.5
UPF1-208	ENST00000600012	SNRPB2	P08579	225 aa	Known RBP	11.9	□□□□□ -0.5
UPF1-208	ENST00000600012	IL3	P08700	152 aa		11.9	□□□□□ -0.5
UPF1-208	ENST00000600012	CERS1	P27544	350 aa		11.9	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms