RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 C1orf109Q9NX04 203 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 NKIRAS1Q9NYS0 192 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 RAP2CQ9Y3L5 183 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF451Q9Y4E5 1061 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 SCN2AQ99250 2005 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 GNG14A0A1W2PPG7 69 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 C17orf105B2RV13 164 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 RGS14O43566 566 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 PEX11AO75192 247 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 CLPSP04118 112 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 CT62P0C5K7 136 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 NEFHP12036 1026 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 TNNI3P19429 210 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 XKP51811 444 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 MGAT2Q10469 447 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 MFAP5Q13361 173 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 NR6A1Q15406 480 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 TERF2Q15554 542 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 OR52E8Q6IFG1 317 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 JMJD6Q6NYC1 403 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 IGFL3Q6UXB1 125 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 ISLR2Q6UXK2 745 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 SIMC1Q8NDZ2 872 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 OR4K14Q8NGD5 310 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF721Q8TF20 911 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF75CPQ92670 426 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 CNRIP1Q96F85 164 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 SENP5Q96HI0 755 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 PPP1R36Q96LQ0 422 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 ILKAPQ9H0C8 392 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 CDCP1Q9H5V8 836 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 LIN28AQ9H9Z2 209 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 WDR41Q9HAD4 459 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 BAIAP2L1Q9UHR4 511 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 PCDHGB7Q9Y5F8 929 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 FAM208BQ5VWN6 2430 aa13.24□□□□□ -0.29
SHKBP1-217ENST00000598558 TRBV11-1A0A0K0K1C0 115 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 C1orf226A1L170 272 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 HMGB1P1B2RPK0 211 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 ERAL1O75616 437 aaKnown RBP13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 WDPCPO95876 746 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 CHEK2O96017 543 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 IGKV3-11P04433 115 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 SLC35E2P0CK97 266 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 SDC1P18827 310 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 S1PR1P21453 382 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 FEN1P39748 380 aaKnown RBP13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 ALDH9A1P49189 494 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 RPL14P50914 215 aaKnown RBP13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 HK2P52789 917 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 OCRLQ01968 901 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 C2orf80Q0P641 193 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 PDCD2Q16342 344 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 PLEKHN1Q494U1 663 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 GALNTL6Q49A17 601 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 CRB2Q5IJ48 1285 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 ACER2Q5QJU3 275 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 C6orf136Q5SQH8 315 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF468Q5VIY5 522 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 ST13P4Q8IZP2 240 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 TMEM132CQ8N3T6 1108 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 Q8NA96 180 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 FAM76AQ8TAV0 307 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 SLC2A12Q8TD20 617 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 THAP3Q8WTV1 239 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 DGAT2Q96PD7 388 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 LMF1Q96S06 567 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 OR8D2Q9GZM6 311 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 MANSC1Q9H8J5 431 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 STMN3Q9NZ72 180 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 LUZP4Q9P127 313 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 CLCA3PQ9Y6N3 262 aa13.23□□□□□ -0.29
SHKBP1-217ENST00000598558 BOD1L1Q8NFC6 3051 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 KALRNO60229 2985 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 TNRC6AQ8NDV7 1962 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 B8ZZF3 427 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 SUV39H1O43463 412 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF354AO60765 605 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 GUCY1B2O75343 617 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 BCKDHAP12694 445 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 CPMP14384 443 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 DRD2P14416 443 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 PORP16435 677 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 PIK3R1P27986 724 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 RPL38P63173 70 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF763Q0D2J5 394 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF267Q14586 743 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 LTB4RQ15722 352 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 SLC6A19Q695T7 634 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 FAM111BQ6SJ93 734 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 RPS19BP1Q86WX3 136 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 BEST3Q8N1M1 668 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 ARMC10Q8N2F6 343 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 MORN4Q8NDC4 146 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 OR1N1Q8NGS0 311 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 OR14A16Q8NHC5 309 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 CLHC1Q8NHS4 586 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 CDC26Q8NHZ8 85 aa13.22□□□□□ -0.29
SHKBP1-217ENST00000598558 GFM2Q969S9 779 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms