RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NACC2Q96BF6 587 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 TBC1D20Q96BZ9 403 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 ART5Q96L15 291 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 OPALINQ96PE5 141 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 F2RL3Q96RI0 385 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 WFDC6Q9BQY6 131 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 UCK2Q9BZX2 261 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 ANKHQ9HCJ1 492 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 SLC35C2Q9NQQ7 365 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 C1GALT1Q9NS00 363 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 FKBP14Q9NWM8 211 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 H0YIV9 168 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 K7ESM1 405 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 SOD2P04179 222 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 PRPH2P23942 346 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 RORCP51449 518 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 MVDP53602 400 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 SLCO4C1Q6ZQN7 724 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 TM9SF2Q99805 663 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 SLC46A2Q9BY10 475 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.53□□□□□ -0.08
UPF1-204ENST00000596842 BARHL1Q9BZE3 327 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 ELAC1Q9H777 363 aaKnown RBP14.53□□□□□ -0.08
UPF1-204ENST00000596842 RANGRFQ9HD47 186 aaPredicted RBP14.53□□□□□ -0.08
UPF1-204ENST00000596842 BACE2Q9Y5Z0 518 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 ARPC4-TTLL3A0A0A6YYG9 625 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 OR6C70A6NIJ9 312 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 AGAP14A8MT82 685 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 H3BQ06 376 aaPredicted RBP14.52□□□□□ -0.08
UPF1-204ENST00000596842 CSO75390 466 aaKnown RBP14.52□□□□□ -0.08
UPF1-204ENST00000596842 CYP2A6P11509 494 aaPredicted RBP14.52□□□□□ -0.08
UPF1-204ENST00000596842 TIE1P35590 1138 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 ATP6V1E1P36543 226 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 BUD31P41223 144 aaPredicted RBP14.52□□□□□ -0.08
UPF1-204ENST00000596842 PAMR1Q6UXH9 720 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 MACROD1Q9BQ69 325 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 TMEM175Q9BSA9 504 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 IL21Q9HBE4 155 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 HHATLQ9HCP6 504 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 GULP1Q9UBP9 304 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 TBC1D24Q9ULP9 559 aa14.52□□□□□ -0.08
UPF1-204ENST00000596842 CCDC182A6NF36 153 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 BTN3A3O00478 584 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 ERAL1O75616 437 aaKnown RBP14.52□□□□□ -0.09
UPF1-204ENST00000596842 INHAP05111 366 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 FURINP09958 794 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 CD72P21854 359 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 ABATP80404 500 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 PUM1Q14671 1186 aaKnown RBP eCLIP14.52□□□□□ -0.09
UPF1-204ENST00000596842 Q6ZNB5 142 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 KRT73Q86Y46 540 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 TOR1AIP2Q8NFQ8 470 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 GATAD2BQ8WXI9 593 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 GLYATL1Q969I3 302 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 ZNF558Q96NG5 402 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 SDHCQ99643 169 aaPredicted RBP14.52□□□□□ -0.09
UPF1-204ENST00000596842 PLCXD1Q9NUJ7 323 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 POLHQ9Y253 713 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 WNT6Q9Y6F9 365 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 CLCA3PQ9Y6N3 262 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 A0A1W2PQL4 384 aaPredicted RBP14.52□□□□□ -0.09
UPF1-204ENST00000596842 GPR37L1O60883 481 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 ALDH1A1P00352 501 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 ATXN8OSP0DMR3 200 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 TYRP14679 529 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 CST5P28325 142 aaPredicted RBP14.52□□□□□ -0.09
UPF1-204ENST00000596842 HTR3AP46098 478 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 MAPK12P53778 367 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 ARHGEF6Q15052 776 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 SNAPC1Q16533 368 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 CRTC2Q53ET0 693 aaPredicted RBP14.52□□□□□ -0.09
UPF1-204ENST00000596842 LY6G5CQ5SRR4 150 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 ZNF697Q5TEC3 545 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 OR4C15Q8NGM1 316 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 MTERF3Q96E29 417 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 CCDC59Q9P031 241 aaKnown RBP14.52□□□□□ -0.09
UPF1-204ENST00000596842 PCM1Q15154 2024 aa14.52□□□□□ -0.09
UPF1-204ENST00000596842 FRS3O43559 492 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 IL7P13232 177 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 NPPBP16860 134 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 XCR1P46094 333 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 MAP4K2Q12851 820 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 MRPL28Q13084 256 aaKnown RBP14.51□□□□□ -0.09
UPF1-204ENST00000596842 CDKL4Q5MAI5 379 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 REEP3Q6NUK4 255 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 ENKURQ8TC29 256 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 SLC38A5Q8WUX1 472 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 ARMC5Q96C12 935 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 TCEAL4Q96EI5 215 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 RACGAP1Q9H0H5 632 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 CHST8Q9H2A9 424 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 TBC1D17Q9HA65 648 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 EQTNQ9NQ60 294 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 ANHXE9PGG2 379 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 FFAR1O14842 300 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 NR2F1P10589 423 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 ZNF91Q05481 1191 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 TPGS2Q68CL5 300 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 ABI3BPQ7Z7G0 1075 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 PGBD3Q8N328 593 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms