RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 VPS4AQ9UN37 437 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 NEUROG3Q9Y4Z2 214 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 PCDHB14Q9Y5E9 798 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 CEP250Q9BV73 2442 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 TRBV5-3A0A0A0MS03 114 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 A0A1W2PS29 197 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 GPR75O95800 540 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ZNF28P17035 718 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 PTPN6P29350 595 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 XKP51811 444 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ID2Q02363 134 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 SLC13A2Q13183 592 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ERV3-1Q14264 604 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ZNF621Q6ZSS3 439 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 COX15Q7KZN9 410 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ZNF551Q7Z340 670 aaPredicted RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 ZC3H7AQ8IWR0 971 aaKnown RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 OR4N5Q8IXE1 308 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 MSRB3Q8IXL7 192 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 CACTIN-AS1Q8N1I8 211 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 LRRC25Q8N386 305 aaPredicted RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 WDR36Q8NI36 951 aaKnown RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 SUN3Q8TAQ9 357 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 TAAR9Q96RI9 348 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 THTPAQ9BU02 230 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 DDA1Q9BW61 102 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 SLC25A37Q9NYZ2 338 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 PRPF19Q9UMS4 504 aaKnown RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 B3GALT1Q9Y5Z6 326 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 PTPRZ1P23471 2315 aaPredicted RBP13.77□□□□□ -0.2
VRK3-212ENST00000596814 CNOT1A5YKK6 2376 aaKnown RBP13.77□□□□□ -0.2
VRK3-212ENST00000596814 PMS2P1A4D2B8 440 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 CTNSO60931 367 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 JRKO75564 520 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 ZCCHC18P0CG32 403 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 CPMP14384 443 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 SLC6A2P23975 617 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 MPIP34949 423 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 GPC1P35052 558 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 SOAT1P35610 550 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 PGM1P36871 562 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 SLC7A2P52569 658 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 HSD17B7P56937 341 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 KCNJ2P63252 427 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 DUSP2Q05923 314 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 GAB1Q13480 694 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 C3orf38Q5JPI3 329 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 MED25Q71SY5 747 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 TMPRSS12Q86WS5 348 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 CCDC116Q8IYX3 515 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 ARHGAP24Q8N264 748 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 TRIML2Q8N7C3 387 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 OR8J3Q8NGG0 315 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 ANKRD9Q96BM1 317 aaPredicted RBP13.77□□□□□ -0.21
VRK3-212ENST00000596814 LRFN5Q96NI6 719 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 ANKRD27Q96NW4 1050 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 ASPSCR1Q9BZE9 553 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 LANCL2Q9NS86 450 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 SLC22A11Q9NSA0 550 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 ADA2Q9NZK5 511 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 CTSFQ9UBX1 484 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 ERVK-11Q9UQG0 969 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 MMACHCQ9Y4U1 282 aa13.77□□□□□ -0.21
VRK3-212ENST00000596814 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.77□□□□□ -0.21
VRK3-212ENST00000596814 A0A1W2PNU3 283 aaPredicted RBP13.76□□□□□ -0.21
VRK3-212ENST00000596814 CFAP73A6NFT4 308 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 MEN1O00255 615 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 BMP10O95393 424 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 ONECUT2O95948 504 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 PORP16435 677 aaPredicted RBP13.76□□□□□ -0.21
VRK3-212ENST00000596814 AGXTP21549 392 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 CDK9P50750 372 aaKnown RBP13.76□□□□□ -0.21
VRK3-212ENST00000596814 MTPNP58546 118 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 TARDBPQ13148 414 aaKnown RBP eCLIP13.76□□□□□ -0.212e-6■■■■□ 23
VRK3-212ENST00000596814 MINDY4Q4G0A6 757 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 RUNDC3AQ59EK9 446 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 RABL3Q5HYI8 236 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 MFSD4BQ5TF39 518 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 NANOGP8Q6NSW7 305 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 SCUBE1Q8IWY4 988 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 TMEM125Q96AQ2 219 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 AURKBQ96GD4 344 aaPredicted RBP13.76□□□□□ -0.21
VRK3-212ENST00000596814 RAB3IPQ96QF0 476 aaPredicted RBP13.76□□□□□ -0.21
VRK3-212ENST00000596814 PHF12Q96QT6 1004 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 CDRT15Q96T59 188 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 DPH2Q9BQC3 489 aaPredicted RBP13.76□□□□□ -0.21
VRK3-212ENST00000596814 CPPED1Q9BRF8 314 aaPredicted RBP13.76□□□□□ -0.21
VRK3-212ENST00000596814 TRIM8Q9BZR9 551 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 MMADHCQ9H3L0 296 aaPredicted RBP13.76□□□□□ -0.21
VRK3-212ENST00000596814 CXorf36Q9H7Y0 433 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 NANOGQ9H9S0 305 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 SEMA3GQ9NS98 782 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 SIRT3Q9NTG7 399 aaPredicted RBP13.76□□□□□ -0.21
VRK3-212ENST00000596814 TMEM181Q9P2C4 612 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 IFT80Q9P2H3 777 aaPredicted RBP13.76□□□□□ -0.21
VRK3-212ENST00000596814 ABCD2Q9UBJ2 740 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 SATB2Q9UPW6 733 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 L3MBTL1Q9Y468 752 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 SNX8Q9Y5X2 465 aa13.76□□□□□ -0.21
VRK3-212ENST00000596814 DMXL1Q9Y485 3027 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms