RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SLC18A1P54219 525 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 MAGOHP61326 146 aaKnown RBP14.01□□□□□ -0.17
UPF1-202ENST00000594243 RAE1P78406 368 aaKnown RBP14.01□□□□□ -0.17
UPF1-202ENST00000594243 TLE1Q04724 770 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 MPP2Q14168 576 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 ZNF169Q14929 603 aaPredicted RBP14.01□□□□□ -0.17
UPF1-202ENST00000594243 HEPACAMQ14CZ8 416 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 CHI3L2Q15782 390 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 COLEC12Q5KU26 742 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 SH2D4BQ5SQS7 431 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 FCRLBQ6BAA4 426 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 SLC48A1Q6P1K1 146 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 HDXQ7Z353 690 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 KIF2BQ8N4N8 673 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 CATSPER1Q8NEC5 780 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 UCN3Q969E3 161 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 PPWD1Q96BP3 646 aaKnown RBP14.01□□□□□ -0.17
UPF1-202ENST00000594243 C11orf24Q96F05 449 aaPredicted RBP14.01□□□□□ -0.17
UPF1-202ENST00000594243 PAIP2Q9BPZ3 127 aaKnown RBP14.01□□□□□ -0.17
UPF1-202ENST00000594243 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.01□□□□□ -0.17
UPF1-202ENST00000594243 PLA2G3Q9NZ20 509 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 COPS7AQ9UBW8 275 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 DNAJC15Q9Y5T4 150 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 TMEM114B3SHH9 223 aa14□□□□□ -0.17
UPF1-202ENST00000594243 NPIPB8E9PQR5 432 aa14□□□□□ -0.17
UPF1-202ENST00000594243 SEC22BO75396 215 aa14□□□□□ -0.17
UPF1-202ENST00000594243 HSPA4LO95757 839 aa14□□□□□ -0.17
UPF1-202ENST00000594243 SERPINE1P05121 402 aa14□□□□□ -0.17
UPF1-202ENST00000594243 PLA2G2AP14555 144 aa14□□□□□ -0.17
UPF1-202ENST00000594243 PRPH2P23942 346 aa14□□□□□ -0.17
UPF1-202ENST00000594243 TNFSF10P50591 281 aa14□□□□□ -0.17
UPF1-202ENST00000594243 XKP51811 444 aa14□□□□□ -0.17
UPF1-202ENST00000594243 HHATQ5VTY9 493 aa14□□□□□ -0.17
UPF1-202ENST00000594243 HSDL2Q6YN16 418 aa14□□□□□ -0.17
UPF1-202ENST00000594243 BEST3Q8N1M1 668 aa14□□□□□ -0.17
UPF1-202ENST00000594243 ARMC10Q8N2F6 343 aa14□□□□□ -0.17
UPF1-202ENST00000594243 HORMAD2Q8N7B1 307 aa14□□□□□ -0.17
UPF1-202ENST00000594243 ANKRD42Q8N9B4 389 aa14□□□□□ -0.17
UPF1-202ENST00000594243 Q8NA96 180 aa14□□□□□ -0.17
UPF1-202ENST00000594243 OR5L2Q8NGL0 311 aa14□□□□□ -0.17
UPF1-202ENST00000594243 OR8K3Q8NH51 312 aa14□□□□□ -0.17
UPF1-202ENST00000594243 SLC2A12Q8TD20 617 aa14□□□□□ -0.17
UPF1-202ENST00000594243 C16orf78Q8WTQ4 265 aa14□□□□□ -0.17
UPF1-202ENST00000594243 RIT1Q92963 219 aa14□□□□□ -0.17
UPF1-202ENST00000594243 TLCD1Q96CP7 247 aa14□□□□□ -0.17
UPF1-202ENST00000594243 SENP5Q96HI0 755 aaPredicted RBP14□□□□□ -0.17
UPF1-202ENST00000594243 CCT7Q99832 543 aa14□□□□□ -0.17
UPF1-202ENST00000594243 UTP23Q9BRU9 249 aaKnown RBP14□□□□□ -0.17
UPF1-202ENST00000594243 OR8D2Q9GZM6 311 aa14□□□□□ -0.17
UPF1-202ENST00000594243 PFDN4Q9NQP4 134 aa14□□□□□ -0.17
UPF1-202ENST00000594243 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14□□□□□ -0.17
UPF1-202ENST00000594243 CES1P1Q9UKY3 287 aa14□□□□□ -0.17
UPF1-202ENST00000594243 DLGAP4Q9Y2H0 992 aa14□□□□□ -0.17
UPF1-202ENST00000594243 WBP11Q9Y2W2 641 aaKnown RBP14□□□□□ -0.17
UPF1-202ENST00000594243 CCL27Q9Y4X3 112 aa14□□□□□ -0.17
UPF1-202ENST00000594243 CSAG2Q9Y5P2 127 aa14□□□□□ -0.17
UPF1-202ENST00000594243 SCN2AQ99250 2005 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 TRAV17A0A0B4J275 112 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 TMEM120BA0PK00 339 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 DDAH2O95865 285 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 LINC00032P0C843 101 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 H2AFXP16104 143 aaPredicted RBP13.99□□□□□ -0.17
UPF1-202ENST00000594243 PORP16435 677 aaPredicted RBP13.99□□□□□ -0.17
UPF1-202ENST00000594243 CSNK2A2P19784 350 aaPredicted RBP13.99□□□□□ -0.17
UPF1-202ENST00000594243 ALDH9A1P49189 494 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 MLLT10P55197 1068 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 MLF1P58340 268 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 ABCE1P61221 599 aaKnown RBP13.99□□□□□ -0.17
UPF1-202ENST00000594243 ZNF763Q0D2J5 394 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 SPRED3Q2MJR0 410 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 UGT3A2Q3SY77 523 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 C6orf163Q5TEZ5 329 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 AGBL2Q5U5Z8 902 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 NOXRED1Q6NXP6 359 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 RPUSD3Q6P087 351 aaKnown RBP13.99□□□□□ -0.17
UPF1-202ENST00000594243 Q6ZSR9 355 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 DDIASQ8IXT1 998 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 KIRREL3Q8IZU9 778 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 CPT1CQ8TCG5 803 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 ZNF721Q8TF20 911 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 TWIST2Q8WVJ9 160 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 FBXL20Q96IG2 436 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 NPAS2Q99743 824 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 VIPAS39Q9H9C1 493 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 LRTM1Q9HBL6 345 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 C1orf109Q9NX04 203 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 NKIRAS1Q9NYS0 192 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 LUZP4Q9P127 313 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 ZDHHC2Q9UIJ5 367 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 ZNF223Q9UK11 482 aaPredicted RBP13.99□□□□□ -0.17
UPF1-202ENST00000594243 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.99□□□□□ -0.17
UPF1-202ENST00000594243 ZNF780BQ9Y6R6 833 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 TENM4Q6N022 2769 aa13.99□□□□□ -0.17
UPF1-202ENST00000594243 GABRR3A8MPY1 467 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 J3QKU1 62 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 ERAL1O75616 437 aaKnown RBP13.98□□□□□ -0.17
UPF1-202ENST00000594243 ZIC2O95409 532 aaPredicted RBP13.98□□□□□ -0.17
UPF1-202ENST00000594243 F10P00742 488 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 IL3P08700 152 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 CPMP14384 443 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms