RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 OR4C11Q6IEV9 310 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 MED27Q6P2C8 311 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 LRRC70Q7Z2Q7 622 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 MAATS1Q7Z4T9 603 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 WDR53Q7Z5U6 358 aaPredicted RBP12.88□□□□□ -0.35
VMP1-209ENST00000588915 C9orf40Q8IXQ3 194 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 ZZZ3Q8IYH5 903 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 ULK2Q8IYT8 1036 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 ST13P4Q8IZP2 240 aaPredicted RBP12.88□□□□□ -0.35
VMP1-209ENST00000588915 GOT1L1Q8NHS2 421 aaPredicted RBP12.88□□□□□ -0.35
VMP1-209ENST00000588915 FAM222BQ8WU58 562 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 CDKL2Q92772 493 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 ESAMQ96AP7 390 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 MBD6Q96DN6 1003 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 RMND5BQ96G75 393 aaPredicted RBP12.88□□□□□ -0.35
VMP1-209ENST00000588915 UBXN10Q96LJ8 280 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 ALPK1Q96QP1 1244 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 KRT12Q99456 494 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 CPNE1Q99829 537 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 CNPPD1Q9BV87 410 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 PROK2Q9HC23 129 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 PHF11Q9UIL8 331 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 MTO1Q9Y2Z2 717 aaKnown RBP12.88□□□□□ -0.35
VMP1-209ENST00000588915 TSC22D4Q9Y3Q8 395 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 AKAP6Q13023 2319 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 MAP1AP78559 2803 aaPredicted RBP12.87□□□□□ -0.35
VMP1-209ENST00000588915 IQANK1A0A1B0GTG1 560 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 OR6C76A6NM76 312 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 CAPN14A8MX76 684 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 RTCAO00442 366 aaKnown RBP12.87□□□□□ -0.35
VMP1-209ENST00000588915 FGF17O60258 216 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 CCNT2O60583 730 aaKnown RBP12.87□□□□□ -0.35
VMP1-209ENST00000588915 TGFB1P01137 390 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 C1QAP02745 245 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 FBXO45P0C2W1 286 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 RFPL3SP0C7P2 107 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 STMN1P16949 149 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 TIMP3P35625 211 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 PIK3CBP42338 1070 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 SSR2P43308 183 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 ASCL1P50553 236 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 SLAMF1Q13291 335 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 OR4D1Q15615 310 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 ZKSCAN8Q15776 578 aaPredicted RBP12.87□□□□□ -0.35
VMP1-209ENST00000588915 NTRK2Q16620 822 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 FLYWCH1Q4VC44 716 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 KHDRBS2Q5VWX1 349 aaKnown RBP12.87□□□□□ -0.35
VMP1-209ENST00000588915 SLC29A4Q7RTT9 530 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 GPR180Q86V85 440 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 TAGAPQ8N103 731 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 ZCCHC7Q8N3Z6 543 aaKnown RBP12.87□□□□□ -0.35
VMP1-209ENST00000588915 LIX1Q8N485 282 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 OR7G3Q8NG95 312 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 STAG3L4Q8TBR4 150 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 RNASE6Q93091 150 aaKnown RBP12.87□□□□□ -0.35
VMP1-209ENST00000588915 RGMAQ96B86 450 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 GPR22Q99680 433 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 GPATCH1Q9BRR8 931 aaKnown RBP12.87□□□□□ -0.35
VMP1-209ENST00000588915 CENPKQ9BS16 269 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 CRIM1Q9NZV1 1036 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 TXNDC16Q9P2K2 825 aa12.87□□□□□ -0.35
VMP1-209ENST00000588915 MTRF1LQ9UGC7 380 aaKnown RBP12.87□□□□□ -0.35
VMP1-209ENST00000588915 CHCHD2Q9Y6H1 151 aaPredicted RBP12.87□□□□□ -0.35
VMP1-209ENST00000588915 LRRC3CA6NJW4 275 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 A6NNC1 897 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 CCDC188H7C350 402 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 TP53I11O14683 189 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 PHGDHO43175 533 aaKnown RBP12.86□□□□□ -0.35
VMP1-209ENST00000588915 PROM1O43490 865 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 GOSR1O95249 250 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 S100BP04271 92 aaPredicted RBP12.86□□□□□ -0.35
VMP1-209ENST00000588915 ALOX15P16050 662 aaPredicted RBP12.86□□□□□ -0.35
VMP1-209ENST00000588915 UQCRC1P31930 480 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 BUD31P41223 144 aaPredicted RBP12.86□□□□□ -0.35
VMP1-209ENST00000588915 TNFRSF17Q02223 184 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 ID2Q02363 134 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 FASTKD3Q14CZ7 662 aaKnown RBP12.86□□□□□ -0.35
VMP1-209ENST00000588915 FBXO48Q5FWF7 155 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 TMEM198Q66K66 360 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 SEM1Q6ZVN7 128 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 LACC1Q8IV20 430 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 KLHL7Q8IXQ5 586 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 PM20D2Q8IYS1 436 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 ZBED8Q8IZ13 594 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 SPATA6LQ8N4H0 392 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 PYROXD1Q8WU10 500 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 SREK1Q8WXA9 508 aaKnown RBP12.86□□□□□ -0.35
VMP1-209ENST00000588915 TP53INP1Q96A56 240 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 SECISBP2Q96T21 854 aaKnown RBP12.86□□□□□ -0.35
VMP1-209ENST00000588915 RBBP8Q99708 897 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 SH3GL2Q99962 352 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 CAB39LQ9H9S4 337 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 SMYD2Q9NRG4 433 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 RNF112Q9ULX5 631 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 ARHGAP21Q5T5U3 1957 aa12.86□□□□□ -0.35
VMP1-209ENST00000588915 EFCAB8A8MWE9 144 aa12.85□□□□□ -0.35
VMP1-209ENST00000588915 K7EPI3 171 aa12.85□□□□□ -0.35
VMP1-209ENST00000588915 EIF3HO15372 352 aaKnown RBP eCLIP12.85□□□□□ -0.35
VMP1-209ENST00000588915 TRIM3O75382 744 aaPredicted RBP12.85□□□□□ -0.35
VMP1-209ENST00000588915 SNX4O95219 450 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms