RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 UCN3Q969E3 161 aa10.1□□□□□ -0.79
SS18-213ENST00000579640 CIDECQ96AQ7 238 aaPredicted RBP10.1□□□□□ -0.79
SS18-213ENST00000579640 MIEF2Q96C03 454 aa10.1□□□□□ -0.79
SS18-213ENST00000579640 CNRIP1Q96F85 164 aaPredicted RBP10.1□□□□□ -0.79
SS18-213ENST00000579640 ZNF681Q96N22 645 aa10.1□□□□□ -0.79
SS18-213ENST00000579640 PANX1Q96RD7 426 aa10.1□□□□□ -0.79
SS18-213ENST00000579640 PELOQ9BRX2 385 aaKnown RBP10.1□□□□□ -0.79
SS18-213ENST00000579640 RBCK1Q9BYM8 510 aa10.1□□□□□ -0.79
SS18-213ENST00000579640 FAM117AQ9C073 453 aa10.1□□□□□ -0.79
SS18-213ENST00000579640 NRSN2Q9GZP1 204 aa10.1□□□□□ -0.79
SS18-213ENST00000579640 WDR54Q9H977 334 aa10.1□□□□□ -0.79
SS18-213ENST00000579640 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.1□□□□□ -0.79
SS18-213ENST00000579640 GPN3Q9UHW5 284 aaPredicted RBP10.1□□□□□ -0.79
SS18-213ENST00000579640 PADI1Q9ULC6 663 aa10.1□□□□□ -0.79
SS18-213ENST00000579640 CNOT1A5YKK6 2376 aaKnown RBP10.09□□□□□ -0.79
SS18-213ENST00000579640 VSTM2BA6NLU5 285 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 SLITRK5O94991 958 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 ZGLP1P0C6A0 271 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 SLC35E2P0CK97 266 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 CPMP14384 443 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 NCBP2P52298 156 aaKnown RBP eCLIP10.09□□□□□ -0.791e-8■■■□□ 16.9
SS18-213ENST00000579640 ERV3-1Q14264 604 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 NKG7Q16617 165 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 LRIF1Q5T3J3 769 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 MRPL14Q6P1L8 145 aaKnown RBP10.09□□□□□ -0.79
SS18-213ENST00000579640 C16orf89Q6UX73 402 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 ANKRD46Q86W74 232 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 ESX1Q8N693 406 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 TRIML2Q8N7C3 387 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 PLPP5Q8NEB5 264 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 STT3BQ8TCJ2 826 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 ANKRD9Q96BM1 317 aaPredicted RBP10.09□□□□□ -0.79
SS18-213ENST00000579640 SLC46A1Q96NT5 459 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 AMDHD1Q96NU7 426 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 HOPXQ9BPY8 73 aaPredicted RBP10.09□□□□□ -0.79
SS18-213ENST00000579640 SERHLQ9NQF3 203 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 TAS2R9Q9NYW1 312 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 MAP10Q9P2G4 905 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 CTSFQ9UBX1 484 aa10.09□□□□□ -0.79
SS18-213ENST00000579640 C15orf38-AP3S2A0A0A6YYH1 394 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 WASHC1A8K0Z3 465 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 LDB3O75112 727 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 CDC123O75794 336 aaPredicted RBP10.08□□□□□ -0.8
SS18-213ENST00000579640 ANP32DO95626 131 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 CPSF4O95639 269 aaKnown RBP10.08□□□□□ -0.8
SS18-213ENST00000579640 C6orf47O95873 294 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 ATP1B1P05026 303 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 IFI6P09912 130 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 ZCCHC18P0CG32 403 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 PTPN4P29074 926 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 FEN1P39748 380 aaKnown RBP10.08□□□□□ -0.8
SS18-213ENST00000579640 PUM1Q14671 1186 aaKnown RBP eCLIP10.08□□□□□ -0.8
SS18-213ENST00000579640 MINDY4Q4G0A6 757 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 DNAL1Q4LDG9 190 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 VWA2Q5GFL6 755 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 MFSD4BQ5TF39 518 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 MLIPQ5VWP3 458 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 CPZQ66K79 652 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 FAM198BQ6UWH4 519 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 ARPINQ7Z6K5 226 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 CCDC116Q8IYX3 515 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 ST13P4Q8IZP2 240 aaPredicted RBP10.08□□□□□ -0.8
SS18-213ENST00000579640 CLECL1Q8IZS7 167 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 RBM15BQ8NDT2 890 aaKnown RBP10.08□□□□□ -0.8
SS18-213ENST00000579640 OR4A15Q8NGL6 344 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 PSMA8Q8TAA3 256 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 LRRC58Q96CX6 371 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 PTCHD1Q96NR3 888 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 PHF12Q96QT6 1004 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 PAIP1Q9H074 479 aaKnown RBP10.08□□□□□ -0.8
SS18-213ENST00000579640 CHST8Q9H2A9 424 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 GLIPR2Q9H4G4 154 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 SLAMF7Q9NQ25 335 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 SEMA3GQ9NS98 782 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 FOXJ2Q9P0K8 574 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 CROTQ9UKG9 612 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 VPS4AQ9UN37 437 aa10.08□□□□□ -0.8
SS18-213ENST00000579640 IGKV3D-11A0A0A0MRZ8 115 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.07□□□□□ -0.8
SS18-213ENST00000579640 STMND1H3BQB6 276 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 JRKO75564 520 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 DXOO77932 396 aaKnown RBP10.07□□□□□ -0.8
SS18-213ENST00000579640 RAB40ALP0C0E4 278 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 C8orf89P0DMQ9 161 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 SLC5A2P31639 672 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 GALNSP34059 522 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 GPC1P35052 558 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 STT3AP46977 705 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 HBA1P69905 142 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 BTG2P78543 158 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 PLIN5Q00G26 463 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 RHAGQ02094 409 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 NCF4Q15080 339 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 DLEU7Q6UYE1 221 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 TMEM64Q6YI46 380 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 OR4N5Q8IXE1 308 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 NLGN4XQ8N0W4 816 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 PGAM4Q8N0Y7 254 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 SHISA5Q8N114 240 aa10.07□□□□□ -0.8
SS18-213ENST00000579640 NLGN4YQ8NFZ3 816 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms