RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CDC20BQ86Y33 519 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 PHC2Q8IXK0 858 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 OR8H3Q8N146 312 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 NUP93Q8N1F7 819 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 POM121L12Q8N7R1 296 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 OR9Q2Q8NGE9 314 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 OR52K2Q8NGK3 314 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 OR5M9Q8NGP3 310 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 CD99L2Q8TCZ2 262 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 ANKRD49Q8WVL7 239 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 FRAT1Q92837 279 aaPredicted RBP4.22□□□□□ -1.73
NUP88-213ENST00000576862 C11orf52Q96A22 123 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 CFAP36Q96G28 342 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 GBP5Q96PP8 586 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 DESI2Q9BSY9 194 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 NT5C3AQ9H0P0 336 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 IL1RAPQ9NPH3 570 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 EXTL2Q9UBQ6 330 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 KLK11Q9UBX7 282 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 PILRAQ9UKJ1 303 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 CFAP45Q9UL16 551 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 PLCL2Q9UPR0 1127 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 KIF20BQ96Q89 1820 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 AKAP12Q02952 1782 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 SLIT3O75094 1523 aa4.21□□□□□ -1.73
NUP88-213ENST00000576862 CHD2O14647 1828 aaKnown RBP4.21□□□□□ -1.74
NUP88-213ENST00000576862 ACOD1A6NK06 481 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 LMO7DNF2Z398 122 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 SIGLEC5O15389 551 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 SLC7A4O43246 635 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 SRSF10O75494 262 aaKnown RBP4.21□□□□□ -1.74
NUP88-213ENST00000576862 OPN1MWP04001 364 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 OPN1MW2P0DN77 364 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 OPN1MW3P0DN78 364 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 PAX7P23759 505 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 GIFP27352 417 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 KRT2P35908 639 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 OR3A3P47888 321 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 ERVK-16P61578 105 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 FKBP3Q00688 224 aaKnown RBP4.21□□□□□ -1.74
NUP88-213ENST00000576862 IL1RL1Q01638 556 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 AP1B1Q10567 949 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 BFSP1Q12934 665 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 LRRC37A5PQ49AS3 106 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 MPP7Q5T2T1 576 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 ZNF774Q6NX45 483 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 FAM47EQ6ZV65 393 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 DZIP1Q86YF9 867 aaKnown RBP4.21□□□□□ -1.74
NUP88-213ENST00000576862 TDHQ8IZJ6 230 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 SPEM1Q8N4L4 309 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 SPC24Q8NBT2 197 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 OR2L2Q8NH16 312 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.21□□□□□ -1.74
NUP88-213ENST00000576862 SAP25Q8TEE9 199 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 CTNNBL1Q8WYA6 563 aaPredicted RBP4.21□□□□□ -1.74
NUP88-213ENST00000576862 CORO2AQ92828 525 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 TEKT1Q969V4 418 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 BSCL2Q96G97 398 aaPredicted RBP4.21□□□□□ -1.74
NUP88-213ENST00000576862 ERO1AQ96HE7 468 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 ZNF597Q96LX8 424 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 CCDC43Q96MW1 224 aaKnown RBP4.21□□□□□ -1.74
NUP88-213ENST00000576862 RPF1Q9H9Y2 349 aaKnown RBP4.21□□□□□ -1.74
NUP88-213ENST00000576862 ZNHIT6Q9NWK9 470 aaKnown RBP4.21□□□□□ -1.74
NUP88-213ENST00000576862 PXDNQ92626 1479 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 TNS3Q68CZ2 1445 aa4.21□□□□□ -1.74
NUP88-213ENST00000576862 M0QX08 132 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 DDX39AO00148 427 aaKnown RBP4.2□□□□□ -1.74
NUP88-213ENST00000576862 MCF2LO15068 1137 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 CTAGE5O15320 804 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 ZBTB14O43829 449 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 KLHL41O60662 606 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 MTRF1O75570 445 aaKnown RBP4.2□□□□□ -1.74
NUP88-213ENST00000576862 HOXD4P09016 255 aaPredicted RBP4.2□□□□□ -1.74
NUP88-213ENST00000576862 PCP11498 1178 aaKnown RBP4.2□□□□□ -1.74
NUP88-213ENST00000576862 FEN1P39748 380 aaKnown RBP4.2□□□□□ -1.74
NUP88-213ENST00000576862 PRELPP51888 382 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 RBP5P82980 135 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 PPA1Q15181 289 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 UPP1Q16831 310 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 MACC1Q6ZN28 852 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 CDHR3Q6ZTQ4 885 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 C15orf52Q6ZUT6 534 aaKnown RBP4.2□□□□□ -1.74
NUP88-213ENST00000576862 Q6ZVQ6 151 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 PHLDB2Q86SQ0 1253 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 CCDC185Q8N715 623 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 GOT1L1Q8NHS2 421 aaPredicted RBP4.2□□□□□ -1.74
NUP88-213ENST00000576862 KIAA1524Q8TCG1 905 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 DNASE1L2Q92874 299 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 SGF29Q96ES7 293 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 PCDHB18PQ96TA0 734 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 CHCHD5Q9BSY4 110 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 TCHPQ9BT92 498 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 HEXA-AS1Q9H8Q6 139 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 MIS18AQ9NYP9 233 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 MOSPD1Q9UJG1 213 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 NCKAP1Q9Y2A7 1128 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 MRPL11Q9Y3B7 192 aaKnown RBP4.2□□□□□ -1.74
NUP88-213ENST00000576862 HBS1LQ9Y450 684 aaKnown RBP4.2□□□□□ -1.74
NUP88-213ENST00000576862 PCDHGA1Q9Y5H4 931 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 POMT1Q9Y6A1 747 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms