RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-225	ENST00000569245	ARL2BP	Q9Y2Y0	163 aa		13.55	□□□□□ -0.24
COMMD4-225	ENST00000569245	MMACHC	Q9Y4U1	282 aa		13.55	□□□□□ -0.24
COMMD4-225	ENST00000569245	TCRBV16S1A1N1	A0A5B0	115 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	RTCA	O00442	366 aa	Known RBP	13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	SSR2	P43308	183 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	HTR6	P50406	440 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	RAP1GDS1	P52306	607 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	HSD17B7	P56937	341 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	IFT88	Q13099	833 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	MRPL49	Q13405	166 aa	Known RBP	13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	MEP1A	Q16819	746 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	EIF2S3L	Q2VIR3	472 aa	Known RBP	13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	SLC9B1	Q4ZJI4	515 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	FHL5	Q5TD97	284 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	KHDRBS2	Q5VWX1	349 aa	Known RBP	13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	FAM219B	Q5XKK7	198 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	FAM180A	Q6UWF9	173 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	CLNK	Q7Z7G1	428 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	BEST3	Q8N1M1	668 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	FAM26E	Q8N5C1	309 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	CCDC197	Q8NCU1	140 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	HUS1B	Q8NHY5	278 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	PRR7	Q8TB68	274 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	ACTRT2	Q8TDY3	377 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	GRHL3	Q8TE85	626 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	SELENOM	Q8WWX9	145 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	MTERF1	Q99551	399 aa	Known RBP	13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	EBF4	Q9BQW3	602 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	PRDM7	Q9NQW5	492 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	PNO1	Q9NRX1	252 aa	Known RBP	13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	DAPP1	Q9UN19	280 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	NTNG1	Q9Y2I2	539 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	SPACA6	W5XKT8	324 aa		13.54	□□□□□ -0.24
COMMD4-225	ENST00000569245	NUP210L	Q5VU65	1888 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	IGKV3D-11	A0A0A0MRZ8	115 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	OR5H15	A6NDH6	313 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	SAGE2P	A6NJ88	616 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	NPIPB8	E9PQR5	432 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	SLC28A1	O00337	649 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	RRP9	O43818	475 aa	Known RBP	13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	DIAPH2	O60879	1101 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	MYO1D	O94832	1006 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	AGFG2	O95081	481 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	PDYN	P01213	254 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	IFNA16	P05015	189 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	LINC00032	P0C843	101 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	HSD3B1	P14060	373 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	HIST1H1T	P22492	207 aa	Predicted RBP	13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	ATP5A1	P25705	553 aa	Known RBP	13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	HSD3B2	P26439	372 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	PIK3CB	P42338	1070 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	STX4	Q12846	297 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	SF3A3	Q12874	501 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	DEPDC1	Q5TB30	811 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	H3F3C	Q6NXT2	135 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245		Q6ZSR9	355 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	ACAD11	Q709F0	780 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	LARP4	Q71RC2	724 aa	Known RBP eCLIP	13.53	□□□□□ -0.24	4e-6	■■■■■ 28.7
COMMD4-225	ENST00000569245	UBE3D	Q7Z6J8	389 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	DDIAS	Q8IXT1	998 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	ZNF595	Q8IYB9	648 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	RNF175	Q8N4F7	328 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	KIF2B	Q8N4N8	673 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	GBP7	Q8N8V2	638 aa	Predicted RBP	13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	ACOT4	Q8N9L9	421 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	RGMA	Q96B86	450 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	C3orf30	Q96M34	536 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	CSF3R	Q99062	836 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	UTP23	Q9BRU9	249 aa	Known RBP	13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	RNF32	Q9H0A6	362 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	CDCP1	Q9H5V8	836 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	WDR55	Q9H6Y2	383 aa	Predicted RBP	13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	BRF2	Q9HAW0	419 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	LYRM4	Q9HD34	91 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	TCF7L2	Q9NQB0	619 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	DMRT3	Q9NQL9	472 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	ANKRD10	Q9NXR5	420 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	PPT2	Q9UMR5	302 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	CCL27	Q9Y4X3	112 aa		13.53	□□□□□ -0.24
COMMD4-225	ENST00000569245	SETX	Q7Z333	2677 aa	Known RBP	13.52	□□□□□ -0.24
COMMD4-225	ENST00000569245	ANKUB1	A6NFN9	424 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	FOXE1	O00358	373 aa	Predicted RBP	13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	CYR61	O00622	381 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	RGS14	O43566	566 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	PRAMEF2	O60811	474 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	CPN2	P22792	545 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	PRPH2	P23942	346 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	PTX3	P26022	381 aa	Predicted RBP	13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	EPHA3	P29320	983 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	ST13	P50502	369 aa	Known RBP	13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	NEK2	P51955	445 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	HNRNPF	P52597	415 aa	Known RBP	13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	RPS13	P62277	151 aa	Known RBP	13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	OC90	Q02509	493 aa	Predicted RBP	13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	CSTF3	Q12996	717 aa	Known RBP	13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	SLAMF1	Q13291	335 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	LSM12	Q3MHD2	195 aa	Known RBP	13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	METTL21C	Q5VZV1	264 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	OR4C11	Q6IEV9	310 aa		13.52	□□□□□ -0.25
COMMD4-225	ENST00000569245	RPUSD3	Q6P087	351 aa	Known RBP	13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms