RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ASPHQ12797 758 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 TRAF3Q13114 568 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 ART3Q13508 389 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 SLC29A2Q14542 456 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 ZNF267Q14586 743 aaPredicted RBP19.21■□□□□ 0.67
CLN3-219ENST00000565778 FAM153CQ494X1 144 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 PIGGQ5H8A4 983 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 RPTNQ6XPR3 784 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 BNC2Q6ZN30 1099 aaPredicted RBP19.21■□□□□ 0.67
CLN3-219ENST00000565778 RTL4Q6ZR62 310 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 TMEM151AQ8N4L1 468 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 ZNF808Q8N4W9 903 aaPredicted RBP19.21■□□□□ 0.67
CLN3-219ENST00000565778 UCN3Q969E3 161 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 PELOQ9BRX2 385 aaKnown RBP19.21■□□□□ 0.67
CLN3-219ENST00000565778 CNPPD1Q9BV87 410 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 DEPPQ9NTK1 212 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 TMEM216Q9P0N5 145 aa19.21■□□□□ 0.67
CLN3-219ENST00000565778 A0A1B0GTH9 108 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 ARHGAP10A1A4S6 786 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 HRKO00198 91 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 PPP6CO00743 305 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 PGRMC2O15173 223 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 SEMA3DO95025 777 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 RPS17P08708 135 aaKnown RBP19.2■□□□□ 0.66
CLN3-219ENST00000565778 CNR1P21554 472 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 SMSP52788 366 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 MPEG1Q2M385 716 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 CCNYL2Q5T2Q4 361 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 C10orf62Q5T681 223 aaPredicted RBP19.2■□□□□ 0.66
CLN3-219ENST00000565778 XKRXQ6PP77 449 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 PAGE2Q7Z2X7 111 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 DOLPP1Q86YN1 238 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 TRPC4APQ8TEL6 797 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 ZNF483Q8TF39 744 aaPredicted RBP19.2■□□□□ 0.66
CLN3-219ENST00000565778 RIT1Q92963 219 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 FBXL20Q96IG2 436 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 MRPL1Q9BYD6 325 aaKnown RBP19.2■□□□□ 0.66
CLN3-219ENST00000565778 DEFB127Q9H1M4 99 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.2■□□□□ 0.66
CLN3-219ENST00000565778 SNX6Q9UNH7 406 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 MEMO1Q9Y316 297 aa19.2■□□□□ 0.66
CLN3-219ENST00000565778 G3V3Y1 287 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 ZNF354AO60765 605 aaPredicted RBP19.19■□□□□ 0.66
CLN3-219ENST00000565778 SUPT7LO94864 414 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 AIFM1O95831 613 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 IGKV3-11P04433 115 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 PIK3R1P27986 724 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 PTGS2P35354 604 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 HSD17B3P37058 310 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 PPIAP62937 165 aaKnown RBP19.19■□□□□ 0.66
CLN3-219ENST00000565778 HERVK_113P63132 956 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 ERVK-8P63133 956 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 GGTA1PQ4G0N0 100 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 CHERPQ8IWX8 916 aaKnown RBP19.19■□□□□ 0.66
CLN3-219ENST00000565778 MYRIPQ8NFW9 859 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 OR2M7Q8NG81 312 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 OR52N2Q8NGI0 321 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 NUBPLQ8TB37 319 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 AGAP11Q8TF27 550 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 SELENOMQ8WWX9 145 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 SGCZQ96LD1 299 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 ERVK-6Q9BXR3 956 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 FARSBQ9NSD9 589 aaKnown RBP19.19■□□□□ 0.66
CLN3-219ENST00000565778 SLC12A4Q9UP95 1085 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 ERVK-19Q9WJR5 959 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 ENTPD4Q9Y227 616 aa19.19■□□□□ 0.66
CLN3-219ENST00000565778 A0A1B0GTL3 188 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 GOLGA8RI6L899 631 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 PDYNP01213 254 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 P04436 131 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 SLC35E2P0CK97 266 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 ADORA2A-AS1P86434 159 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 CLCQ05315 142 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 CMPK2Q5EBM0 449 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 OR52E8Q6IFG1 317 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 LETMD1Q6P1Q0 360 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 PAOXQ6QHF9 649 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 C3P1Q6ZMU1 363 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 RNF111Q6ZNA4 994 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 FAM47EQ6ZV65 393 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 SLC29A4Q7RTT9 530 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 FGD2Q7Z6J4 655 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 C9orf40Q8IXQ3 194 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 METTL4Q8N3J2 472 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 GOLM1Q8NBJ4 401 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 OR4K14Q8NGD5 310 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 SLC22A8Q8TCC7 542 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 PHF12Q96QT6 1004 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 FAM173AQ9BQD7 235 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 C1QTNF3Q9BXJ4 246 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 SACM1LQ9NTJ5 587 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 NMRK1Q9NWW6 199 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 TEX10Q9NXF1 929 aaPredicted RBP19.18■□□□□ 0.66
CLN3-219ENST00000565778 TBK1Q9UHD2 729 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 ADAM29Q9UKF5 820 aa19.18■□□□□ 0.66
CLN3-219ENST00000565778 KLF2Q9Y5W3 355 aaPredicted RBP19.18■□□□□ 0.66
CLN3-219ENST00000565778 PINLYPA6NC86 204 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 FAM166BA8MTA8 275 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 ACOT7O00154 380 aa19.17■□□□□ 0.66
CLN3-219ENST00000565778 HNRNPRO43390 633 aaKnown RBP19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms