RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ANKDD1BA6NHY2 528 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 SDR42E2A6NKP2 422 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 DEFB108AA8MXU0 73 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 TP53I11O14683 189 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 SIAH2O43255 324 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 TRIM3O75382 744 aaPredicted RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 F12P00748 615 aaPredicted RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 FBXO45P0C2W1 286 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 HPDP32754 393 aaPredicted RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 GCKP35557 465 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 SLCO1A2P46721 670 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 VPS41P49754 854 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 CDK9P50750 372 aaKnown RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 ATP5J2P56134 94 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 TIAL1Q01085 375 aaKnown RBP eCLIP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 SRYQ05066 204 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 TNK1Q13470 666 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 TRIP13Q15645 432 aaPredicted RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 CCNG2Q16589 344 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 KCTD19Q17RG1 926 aaPredicted RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 EIPR1Q53HC9 387 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 HSP90AA5PQ58FG0 334 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 WIPI1Q5MNZ9 446 aaPredicted RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 TBCELQ5QJ74 424 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 DCST1Q5T197 706 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 ARMC3Q5W041 872 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 LYPD8Q6UX82 237 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 TMIGD1Q6UXZ0 262 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 PLEKHM3Q6ZWE6 761 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 SLC29A4Q7RTT9 530 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 PACS2Q86VP3 889 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 C9orf40Q8IXQ3 194 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 DND1Q8IYX4 353 aaKnown RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 GCNT2Q8N0V5 402 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 MEIOBQ8N635 442 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 MAPK1IP1LQ8NDC0 245 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 OR2L5Q8NG80 312 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 ZPLD1Q8TCW7 415 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 DOK4Q8TEW6 326 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 TMEM171Q8WVE6 324 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 SLC44A1Q8WWI5 657 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 NTNG2Q96CW9 530 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 HES6Q96HZ4 224 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 ZFP3Q96NJ6 502 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 WFIKKN1Q96NZ8 548 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 QRFPRQ96P65 431 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 GNRHR2Q96P88 292 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 DGAT2Q96PD7 388 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 FAM111AQ96PZ2 611 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 TM9SF2Q99805 663 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 FAM167BQ9BTA0 163 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 REXO4Q9GZR2 422 aaKnown RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 RBSNQ9H1K0 784 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 ACBD3Q9H3P7 528 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 PIGMQ9H3S5 423 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 YAE1D1Q9NRH1 226 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 IARS2Q9NSE4 1012 aaKnown RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 CNOT11Q9UKZ1 510 aaKnown RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 REXO2Q9Y3B8 237 aaKnown RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 SPACA6W5XKT8 324 aa6.69□□□□□ -1.34
VPS4A-203ENST00000564399 RAI1Q7Z5J4 1906 aaPredicted RBP6.69□□□□□ -1.34
VPS4A-203ENST00000564399 EXPH5Q8NEV8 1989 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 IQANK1A0A1B0GTG1 560 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 A8MXE2 369 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 RNF223E7ERA6 249 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 H0Y3Z8 333 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 PHF1O43189 567 aaPredicted RBP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 CLEC3AO75596 197 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 SMNDC1O75940 238 aaKnown RBP eCLIP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 RCBTB2O95199 551 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 HPNP05981 417 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 ENO2P09104 434 aaPredicted RBP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 C1GALT1C1LP0DN25 315 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 GNAZP19086 355 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 CRYGSP22914 178 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 ANP32AP39687 249 aaKnown RBP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 MC3RP41968 323 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 KCNJ1P48048 391 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 NAGLUP54802 743 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 CDKN2DP55273 166 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 KRTAP1-1Q07627 177 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 TGM3Q08188 693 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 FAM27E3Q08E93 113 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 KIF5AQ12840 1032 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 GPS1Q13098 491 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 VEZF1Q14119 521 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 SLBPQ14493 270 aaKnown RBP eCLIP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 NTRK2Q16620 822 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 CHRFAM7AQ494W8 412 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 NHSL2Q5HYW2 709 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 RBM20Q5T481 1227 aaKnown RBP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 BICRALQ6AI39 1079 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 ABHD17CQ6PCB6 329 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 PLXDC2Q6UX71 529 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 TMEM64Q6YI46 380 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 YRDCQ86U90 279 aaKnown RBP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 CAND1Q86VP6 1230 aaKnown RBP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 OR4N5Q8IXE1 308 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 TAGAPQ8N103 731 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms