RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SLC39A1Q9NY26 324 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 LIPT1Q9Y234 373 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 MED16Q9Y2X0 877 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 OR51B4Q9Y5P0 310 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 MFSD2BA6NFX1 497 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 C5orf67F2Z3F1 127 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 GPR39O43194 453 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 WDPCPO95876 746 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 OLFM2O95897 454 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 RB1P06400 928 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 IRS1P35568 1242 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 HTR6P50406 440 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 FLI1Q01543 452 aaPredicted RBP12.68□□□□□ -0.38
CLK3-206ENST00000562078 P2RY14Q15391 338 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 CCDC85BQ15834 202 aaPredicted RBP12.68□□□□□ -0.38
CLK3-206ENST00000562078 INO80DQ53TQ3 878 aaPredicted RBP12.68□□□□□ -0.38
CLK3-206ENST00000562078 ERICH5Q6P6B1 374 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 BHLHB9Q6PI77 547 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 PAQR3Q6TCH7 311 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 HS6ST3Q8IZP7 471 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 FBXO39Q8N4B4 442 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 TMEM145Q8NBT3 493 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 TBC1D20Q96BZ9 403 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 FAM120BQ96EK7 910 aaKnown RBP12.68□□□□□ -0.38
CLK3-206ENST00000562078 MED28Q9H204 178 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 RERGLQ9H628 205 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 CERS4Q9HA82 394 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 POPDC3Q9HBV1 291 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 GALPQ9UBC7 116 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 PCDHB9Q9Y5E1 797 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 PRAMEF33A0A0G2JMD5 474 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 ISM1B1AKI9 464 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 ZNF670-ZNF695F2Z2N8 137 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 TEX46H3BTG2 121 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 SLC30A4O14863 429 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 CCL16O15467 120 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 YKT6O15498 198 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 PRAMEF10O60809 474 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 AP2A2O94973 939 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 LDOC1O95751 146 aaPredicted RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 SLC2A4P14672 509 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 CRYBB2P43320 205 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 CENPAP49450 140 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 AP1S2P56377 157 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 PCDH1Q08174 1060 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 LRRC32Q14392 662 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 PTPRNQ16849 979 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 RFTN2Q52LD8 501 aaPredicted RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 ZRANB3Q5FWF4 1079 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 ANKS6Q68DC2 871 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 FAM92BQ6ZTR7 304 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 APCDD1Q8J025 514 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 LRRC17Q8N6Y2 441 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 OR8D4Q8NGM9 314 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 FOXJ1Q92949 421 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 ULK4Q96C45 1275 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 INTS12Q96CB8 462 aaKnown RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 GPR21Q99679 349 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 P2RY13Q9BPV8 354 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 SLC28A3Q9HAS3 691 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 HEBP1Q9NRV9 189 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 SLCO1C1Q9NYB5 712 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 TAS2R13Q9NYV9 303 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 PLEKHB1Q9UF11 243 aaPredicted RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 DPP7Q9UHL4 492 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 NCKAP1Q9Y2A7 1128 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 QSOX1O00391 747 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 NRG2O14511 850 aaPredicted RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 HRO43593 1189 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 NDUFS6O75380 124 aaKnown RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 FABP3P05413 133 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 SYPP08247 313 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 CKMT1AP12532 417 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 GJA1P17302 382 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 CTPS1P17812 591 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 SPANXN4Q5MJ08 99 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 DCAF4L2Q8NA75 395 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 CLRN3Q8NCR9 226 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 UTP15Q8TED0 518 aaKnown RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 MRPS31Q92665 395 aaKnown RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 SLC25A46Q96AG3 418 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 ALG14Q96F25 216 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 AHCYL2Q96HN2 611 aaKnown RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 NUSAP1Q9BXS6 441 aaKnown RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 GABARAPL3Q9BY60 117 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 DCAF16Q9NXF7 216 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 COA4Q9NYJ1 87 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 CFAP97Q9P2B7 532 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 LSM7Q9UK45 103 aaKnown RBP12.67□□□□□ -0.38
CLK3-206ENST00000562078 ASB1Q9Y576 335 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 CDH10Q9Y6N8 788 aa12.67□□□□□ -0.38
CLK3-206ENST00000562078 H0YC42 278 aa12.66□□□□□ -0.38
CLK3-206ENST00000562078 SMAD6O43541 496 aaKnown RBP12.66□□□□□ -0.38
CLK3-206ENST00000562078 NIPSNAP2O75323 286 aa12.66□□□□□ -0.38
CLK3-206ENST00000562078 PRAMEF12O95522 483 aa12.66□□□□□ -0.38
CLK3-206ENST00000562078 ALPIP09923 528 aa12.66□□□□□ -0.38
CLK3-206ENST00000562078 IL1RNP18510 177 aa12.66□□□□□ -0.38
CLK3-206ENST00000562078 CXCL3P19876 107 aa12.66□□□□□ -0.38
CLK3-206ENST00000562078 CRYZQ08257 329 aaKnown RBP12.66□□□□□ -0.38
CLK3-206ENST00000562078 GPM6BQ13491 265 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms