RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TRPS1Q9UHF7 1281 aa14.54□□□□□ -0.08
VPS39-203ENST00000561797 SH3BGRL2Q9UJC5 107 aa14.54□□□□□ -0.08
VPS39-203ENST00000561797 EXPH5Q8NEV8 1989 aa14.54□□□□□ -0.08
VPS39-203ENST00000561797 NINQ8N4C6 2090 aa14.54□□□□□ -0.08
VPS39-203ENST00000561797 USP9YO00507 2555 aaPredicted RBP14.54□□□□□ -0.08
VPS39-203ENST00000561797 SPTBN1Q01082 2364 aaKnown RBP14.53□□□□□ -0.08
VPS39-203ENST00000561797 NCKAP5O14513 1909 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 KLRC4-KLRK1H3BQV0 150 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 PGRMC2O15173 223 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 PEX1O43933 1283 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 OR6B1O95007 311 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 MLYCDO95822 493 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 TNFRSF8P28908 595 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 SOX3P41225 446 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 PRKAA2P54646 552 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 GPR85P60893 370 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 RBPJQ06330 500 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 ZNF267Q14586 743 aaPredicted RBP14.53□□□□□ -0.08
VPS39-203ENST00000561797 RNFT1Q5M7Z0 435 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 GPRIN3Q6ZVF9 776 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 PAGE2Q7Z2X7 111 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 SLC22A9Q8IVM8 553 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 ST13P4Q8IZP2 240 aaPredicted RBP14.53□□□□□ -0.08
VPS39-203ENST00000561797 METTL4Q8N3J2 472 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 OR5L2Q8NGL0 311 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 EPS8L3Q8TE67 593 aaKnown RBP14.53□□□□□ -0.08
VPS39-203ENST00000561797 GPR137Q96N19 417 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 CNPPD1Q9BV87 410 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 ANKZF1Q9H8Y5 726 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 TIMMDC1Q9NPL8 285 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 ADAM29Q9UKF5 820 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 EMCNQ9ULC0 261 aa14.53□□□□□ -0.08
VPS39-203ENST00000561797 A0A1W2PS29 197 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 MANBAO00462 879 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 ZNHIT1O43257 154 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 ASNA1O43681 348 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 ZG16O60844 167 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 GLRA3O75311 464 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 CLDN1O95832 211 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 FREM3P0C091 2139 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 ZNF24P17028 368 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 PIK3R1P27986 724 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 HMOX2P30519 316 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 MAPK12P53778 367 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 ERVK-8P63133 956 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 RASA2Q15283 850 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 ZNF750Q32MQ0 723 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 KRTCAP3Q53RY4 240 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 NDUFAF5Q5TEU4 345 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 OR52E8Q6IFG1 317 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 COMMD6Q7Z4G1 85 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 CCNYL1Q8N7R7 359 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 OR8K3Q8NH51 312 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 RIT1Q92963 219 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 L3HYPDHQ96EM0 354 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 ART5Q96L15 291 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 ZNF382Q96SR6 550 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 PELOQ9BRX2 385 aaKnown RBP14.52□□□□□ -0.09
VPS39-203ENST00000561797 BRF2Q9HAW0 419 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 ERVK-19Q9WJR5 959 aa14.52□□□□□ -0.09
VPS39-203ENST00000561797 CCL21O00585 134 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 ZNF354AO60765 605 aaPredicted RBP14.51□□□□□ -0.09
VPS39-203ENST00000561797 KRT6AP02538 564 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 KRT6BP04259 564 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 IGKV3-11P04433 115 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 MYL2P10916 166 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 COL8A1P27658 744 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 KRT6CP48668 564 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 HSF1Q00613 529 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 GALNT1Q10472 559 aaPredicted RBP14.51□□□□□ -0.09
VPS39-203ENST00000561797 ASPHQ12797 758 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 MAMDC2Q7Z304 686 aaPredicted RBP14.51□□□□□ -0.09
VPS39-203ENST00000561797 SIAH3Q8IW03 269 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 C9orf40Q8IXQ3 194 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 GPALPP1Q8IXQ4 340 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 CNPY4Q8N129 248 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 C1orf52Q8N6N3 182 aaKnown RBP14.51□□□□□ -0.09
VPS39-203ENST00000561797 PSD4Q8NDX1 1056 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 METTL6Q8TCB7 284 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.51□□□□□ -0.09
VPS39-203ENST00000561797 RELTQ969Z4 430 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 FBXL20Q96IG2 436 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 MAGED4Q96JG8 741 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 C12orf65Q9H3J6 166 aaKnown RBP14.51□□□□□ -0.09
VPS39-203ENST00000561797 NMRK1Q9NWW6 199 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 TIMM22Q9Y584 194 aa14.51□□□□□ -0.09
VPS39-203ENST00000561797 SPTAN1Q13813 2472 aaKnown RBP14.51□□□□□ -0.09
VPS39-203ENST00000561797 TLDC2A0PJX2 215 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 G3V2L1 256 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 G3V3Y1 287 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 TFECO14948 347 aaPredicted RBP14.5□□□□□ -0.09
VPS39-203ENST00000561797 SLC19A2O60779 497 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 ULK1O75385 1050 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 PROCP04070 461 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 SLC35E2P0CK97 266 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 CHN1P15882 459 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 CCT5P48643 541 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 HTR6P50406 440 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 CASP6P55212 293 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 VSNL1P62760 191 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms