RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 GPR22Q99680 433 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 GPATCH1Q9BRR8 931 aaKnown RBP15.11■□□□□ 0.01
CLN3-208ENST00000561505 CLEC4MQ9H2X3 399 aaPredicted RBP15.11■□□□□ 0.01
CLN3-208ENST00000561505 LDAHQ9H6V9 325 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 WWOXQ9NZC7 414 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 ZNF629Q9UEG4 869 aaPredicted RBP15.11■□□□□ 0.01
CLN3-208ENST00000561505 BOKQ9UMX3 212 aaPredicted RBP15.11■□□□□ 0.01
CLN3-208ENST00000561505 SPACA6W5XKT8 324 aa15.11■□□□□ 0.01
CLN3-208ENST00000561505 A6NNC1 897 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 HRKO00198 91 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 CCDC166P0CW27 439 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 COX7A2P14406 83 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 TCP1P17987 556 aaKnown RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 MSH2P43246 934 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 ASCL1P50553 236 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 IRF8Q02556 426 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 PDIA2Q13087 525 aaKnown RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 NTRK2Q16620 822 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 HIST2H2ACQ16777 129 aaPredicted RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 AP5B1Q2VPB7 878 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 FLYWCH1Q4VC44 716 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 FBXO48Q5FWF7 155 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 KHDRBS2Q5VWX1 349 aaKnown RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 HIST2H2AA3Q6FI13 130 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 OR4C11Q6IEV9 310 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 MRM1Q6IN84 353 aaKnown RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 LRRC70Q7Z2Q7 622 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 CDC20BQ86Y33 519 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 CREG2Q8IUH2 290 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 ANKMY2Q8IV38 441 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 ST13P4Q8IZP2 240 aaPredicted RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 ZCCHC7Q8N3Z6 543 aaKnown RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 SPATA6LQ8N4H0 392 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 NAXEQ8NCW5 288 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 RNASE6Q93091 150 aaKnown RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 TSPAN17Q96FV3 270 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 RBM18Q96H35 190 aaKnown RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 RUNDC3BQ96NL0 473 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 PRDM14Q9GZV8 571 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 UBQLN3Q9H347 655 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 RPF2Q9H7B2 306 aaKnown RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.1■□□□□ 0.01
CLN3-208ENST00000561505 ADGRE2Q9UHX3 823 aa15.1■□□□□ 0.01
CLN3-208ENST00000561505 FOXD3Q9UJU5 478 aaPredicted RBP15.1■□□□□ 0.01
CLN3-208ENST00000561505 NCKAP5O14513 1909 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 OR6C76A6NM76 312 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 CLPSP04118 112 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 CPN2P22792 545 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 PIK3CBP42338 1070 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 SLC37A1P57057 533 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 ADAM8P78325 824 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 ID2Q02363 134 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 CRYZQ08257 329 aaKnown RBP15.09■□□□□ 0.01
CLN3-208ENST00000561505 FOXD4Q12950 439 aaPredicted RBP15.09■□□□□ 0.01
CLN3-208ENST00000561505 EBPQ15125 230 aaKnown RBP15.09■□□□□ 0.01
CLN3-208ENST00000561505 NHSL2Q5HYW2 709 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 MED27Q6P2C8 311 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 UBTD2Q8WUN7 234 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 CMTM7Q96FZ5 175 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 DGAT2Q96PD7 388 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 ZNF717Q9BY31 904 aaPredicted RBP15.09■□□□□ 0.01
CLN3-208ENST00000561505 PHACTR1Q9C0D0 580 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 CAB39LQ9H9S4 337 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 PSD3Q9NYI0 1048 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 JKAMPQ9P055 326 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 CBLCQ9ULV8 474 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 EDARQ9UNE0 448 aa15.09■□□□□ 0.01
CLN3-208ENST00000561505 CXorf49A8MYA2 514 aaPredicted RBP15.08■□□□□ 0
CLN3-208ENST00000561505 PHGDHO43175 533 aaKnown RBP15.08■□□□□ 0
CLN3-208ENST00000561505 GOSR1O95249 250 aa15.08■□□□□ 0
CLN3-208ENST00000561505 TGFB1P01137 390 aa15.08■□□□□ 0
CLN3-208ENST00000561505 HPNP05981 417 aa15.08■□□□□ 0
CLN3-208ENST00000561505 ALOX15P16050 662 aaPredicted RBP15.08■□□□□ 0
CLN3-208ENST00000561505 DNASE1P24855 282 aa15.08■□□□□ 0
CLN3-208ENST00000561505 SERPINB3P29508 390 aa15.08■□□□□ 0
CLN3-208ENST00000561505 PLIN5Q00G26 463 aa15.08■□□□□ 0
CLN3-208ENST00000561505 DR1Q01658 176 aa15.08■□□□□ 0
CLN3-208ENST00000561505 SLAMF1Q13291 335 aa15.08■□□□□ 0
CLN3-208ENST00000561505 ACSF3Q4G176 576 aaPredicted RBP15.08■□□□□ 0
CLN3-208ENST00000561505 TBCELQ5QJ74 424 aa15.08■□□□□ 0
CLN3-208ENST00000561505 FNDC7Q5VTL7 733 aa15.08■□□□□ 0
CLN3-208ENST00000561505 MAATS1Q7Z4T9 603 aa15.08■□□□□ 0
CLN3-208ENST00000561505 WDR53Q7Z5U6 358 aaPredicted RBP15.08■□□□□ 0
CLN3-208ENST00000561505 ISCA2Q86U28 154 aa15.08■□□□□ 0
CLN3-208ENST00000561505 GPR180Q86V85 440 aa15.08■□□□□ 0
CLN3-208ENST00000561505 LACC1Q8IV20 430 aa15.08■□□□□ 0
CLN3-208ENST00000561505 OR4N5Q8IXE1 308 aa15.08■□□□□ 0
CLN3-208ENST00000561505 SNX31Q8N9S9 440 aa15.08■□□□□ 0
CLN3-208ENST00000561505 TNIP2Q8NFZ5 429 aa15.08■□□□□ 0
CLN3-208ENST00000561505 OR10G3Q8NGC4 313 aa15.08■□□□□ 0
CLN3-208ENST00000561505 SREK1Q8WXA9 508 aaKnown RBP15.08■□□□□ 0
CLN3-208ENST00000561505 TP53INP1Q96A56 240 aa15.08■□□□□ 0
CLN3-208ENST00000561505 PPWD1Q96BP3 646 aaKnown RBP15.08■□□□□ 0
CLN3-208ENST00000561505 RMND5BQ96G75 393 aaPredicted RBP15.08■□□□□ 0
CLN3-208ENST00000561505 ATOH8Q96SQ7 321 aa15.08■□□□□ 0
CLN3-208ENST00000561505 SECISBP2Q96T21 854 aaKnown RBP15.08■□□□□ 0
CLN3-208ENST00000561505 RBBP8Q99708 897 aa15.08■□□□□ 0
CLN3-208ENST00000561505 TIMP4Q99727 224 aa15.08■□□□□ 0
CLN3-208ENST00000561505 PELOQ9BRX2 385 aaKnown RBP15.08■□□□□ 0
CLN3-208ENST00000561505 WWTR1Q9GZV5 400 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms