RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 RRM2P31350 389 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 DSTNP60981 165 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 IL5RAQ01344 420 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 SCARB2Q14108 478 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 ARHGAP19Q14CB8 494 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 TCTE1Q5JU00 501 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 DCAF12Q5T6F0 453 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 PRAMEF20Q5VT98 475 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 ATG9BQ674R7 924 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 CAPRIN2Q6IMN6 1127 aaKnown RBP5.15□□□□□ -1.58
VPS13C-209ENST00000560637 NANOGP8Q6NSW7 305 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 SMARCD3Q6STE5 483 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 NEK10Q6ZWH5 1172 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 CYP4Z1Q86W10 505 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 P3H2Q8IVL5 708 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 LRRC25Q8N386 305 aaPredicted RBP5.15□□□□□ -1.58
VPS13C-209ENST00000560637 ANKRD53Q8N9V6 530 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 CANT1Q8WVQ1 401 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 WDR60Q8WVS4 1066 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 PIK3R3Q92569 461 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 C5orf34Q96MH7 638 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 ZNF607Q96SK3 696 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 NTMT1Q9BV86 223 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 FNDC11Q9BVV2 318 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 PRRG4Q9BZD6 226 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 Q9H521 79 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 NANOGQ9H9S0 305 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 GPN2Q9H9Y4 310 aaPredicted RBP5.15□□□□□ -1.58
VPS13C-209ENST00000560637 SLC6A20Q9NP91 592 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 MKS1Q9NXB0 559 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 TAS2R9Q9NYW1 312 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 VAPAQ9P0L0 249 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 RPH3AQ9Y2J0 694 aaPredicted RBP5.15□□□□□ -1.58
VPS13C-209ENST00000560637 LOXL2Q9Y4K0 774 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 ICE1Q9Y2F5 2266 aa5.15□□□□□ -1.58
VPS13C-209ENST00000560637 IGHV1OR21-1A0A087WYE8 117 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 TRBC2A0A5B9 178 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 PTGES3LE9PB15 166 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 H3BNH8 94 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 PDLIM1O00151 329 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 LSM1O15116 133 aaKnown RBP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 HCRTR2O43614 444 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 TMPRSS11DO60235 418 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 DEAF1O75398 565 aaPredicted RBP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 OR6A2O95222 327 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 HMGN2P05204 90 aaKnown RBP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 CTSBP07858 339 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 PEPDP12955 493 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 PORP16435 677 aaPredicted RBP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 ATP5A1P25705 553 aaKnown RBP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 ACADLP28330 430 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 SSTR4P31391 388 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 CORO7P57737 925 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 CDK6Q00534 326 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 TIAL1Q01085 375 aaKnown RBP eCLIP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 PLGLB1Q02325 96 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 GNA13Q14344 377 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 HES3Q5TGS1 186 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 VASH2Q86V25 355 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 ZNF786Q8N393 782 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 FBXW8Q8N3Y1 598 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 UCN3Q969E3 161 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 TBC1D20Q96BZ9 403 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 C16orf58Q96GQ5 468 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 ADOQ96SZ5 270 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 CCT7Q99832 543 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 CHST8Q9H2A9 424 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 SEMA6CQ9H3T2 930 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 ARMC7Q9H6L4 198 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 MEAF6Q9HAF1 191 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 KCNK13Q9HB14 408 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 Q9N2J8 555 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 ATP6V1HQ9UI12 483 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 POMPQ9Y244 141 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 ST14Q9Y5Y6 855 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 NINQ8N4C6 2090 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 IGLV3-16A0A075B6K0 115 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 C1orf226A1L170 272 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 CPSF4LA6NMK7 179 aaKnown RBP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 GFRA3O60609 400 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 PRKACGP22612 351 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 RFC3P40938 356 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 CDK9P50750 372 aaKnown RBP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 HBA1P69905 142 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 KLC1Q07866 573 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 PRMT9Q6P2P2 845 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 IL20RBQ6UXL0 311 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 RBM44Q6ZP01 1051 aaKnown RBP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 C16orf47Q6ZP98 133 aaPredicted RBP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 CHMP1BQ7LBR1 199 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 ZDHHC13Q8IUH4 622 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 ADGRF3Q8IZF5 1079 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 OFCC1Q8IZS5 231 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 PGAM4Q8N0Y7 254 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 GLB1L3Q8NCI6 653 aaPredicted RBP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.15□□□□□ -1.59
VPS13C-209ENST00000560637 DIO2Q92813 273 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 TP53INP1Q96A56 240 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 TCTN2Q96GX1 697 aa5.15□□□□□ -1.59
VPS13C-209ENST00000560637 TSPAN10Q9H1Z9 355 aaPredicted RBP5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms