RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SGO1Q5FBB7 561 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 TECRLQ5HYJ1 363 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 EMC4Q5J8M3 183 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 MRM1Q6IN84 353 aaKnown RBP9.45□□□□□ -0.9
LDLR-214ENST00000560628 ARHGAP11AQ6P4F7 1023 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 PAOXQ6QHF9 649 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 GK5Q6ZS86 529 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 FAM47EQ6ZV65 393 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 GDF7Q7Z4P5 450 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 SLC22A16Q86VW1 577 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 C9orf40Q8IXQ3 194 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 ZNF295-AS1Q8N0V1 137 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 EID3Q8N140 333 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 ZCCHC7Q8N3Z6 543 aaKnown RBP9.45□□□□□ -0.9
LDLR-214ENST00000560628 RPRMLQ8N4K4 120 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 TMEM251Q8N6I4 163 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 L3MBTL4Q8NA19 623 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 NOA1Q8NC60 698 aaKnown RBP9.45□□□□□ -0.9
LDLR-214ENST00000560628 OR52B6Q8NGF0 335 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 WDR20Q8TBZ3 569 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 PHF10Q8WUB8 498 aaKnown RBP9.45□□□□□ -0.9
LDLR-214ENST00000560628 SLC44A1Q8WWI5 657 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 REPS1Q96D71 796 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 SGCZQ96LD1 299 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 NSUN5Q96P11 429 aaKnown RBP9.45□□□□□ -0.9
LDLR-214ENST00000560628 FAM173AQ9BQD7 235 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 CNPPD1Q9BV87 410 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 ERVK-6Q9BXR3 956 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 ZNF717Q9BY31 904 aaPredicted RBP9.45□□□□□ -0.9
LDLR-214ENST00000560628 UCK2Q9BZX2 261 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 CDC42EP4Q9H3Q1 356 aaKnown RBP9.45□□□□□ -0.9
LDLR-214ENST00000560628 PLSCR2Q9NRY7 297 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 SACM1LQ9NTJ5 587 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 TUBA8Q9NY65 449 aaPredicted RBP9.45□□□□□ -0.9
LDLR-214ENST00000560628 COQ3Q9NZJ6 369 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 TNFRSF10DQ9UBN6 386 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 ERVK-19Q9WJR5 959 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 TSC22D4Q9Y3Q8 395 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 LIPGQ9Y5X9 500 aa9.45□□□□□ -0.9
LDLR-214ENST00000560628 A0A1W2PS29 197 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 CCDC189A1A4V9 331 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 FOXE1O00358 373 aaPredicted RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 UGDHO60701 494 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 GLSO94925 669 aaPredicted RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 NADKO95544 446 aaPredicted RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 AIFM1O95831 613 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 CELA3AP09093 270 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 RBP1P09455 135 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 NR2F6P10588 404 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 TSPAN8P19075 237 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 BUD31P41223 144 aaPredicted RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 MAGEA5P43359 124 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 CCNG1P51959 295 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 PLIN5Q00G26 463 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 PMPCAQ10713 525 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 FOXO1Q12778 655 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 BIKQ13323 160 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 CUL3Q13618 768 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 ZNF791Q3KP31 576 aaPredicted RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 NDUFAF5Q5TEU4 345 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 FAM219BQ5XKK7 198 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 SLC22A10Q63ZE4 541 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 TTC19Q6DKK2 380 aaPredicted RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 TMEM211Q6ICI0 200 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 ZNF585AQ6P3V2 769 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 TMEM64Q6YI46 380 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 RGS9BPQ6ZS82 235 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 RPS27LQ71UM5 84 aaKnown RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 RELL1Q8IUW5 271 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 CCDC71Q8IV32 467 aaPredicted RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 ST13P4Q8IZP2 240 aaPredicted RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 MMGT1Q8N4V1 131 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 GOLM1Q8NBJ4 401 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 C7orf57Q8NEG2 295 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 OR5M3Q8NGP4 307 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 NUBPLQ8TB37 319 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 RND1Q92730 232 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 RIT1Q92963 219 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 FBXL20Q96IG2 436 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 GAL3ST4Q96RP7 486 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 TRIM8Q9BZR9 551 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 DDX31Q9H8H2 851 aaKnown RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 ZDHHC11Q9H8X9 412 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 WDR41Q9HAD4 459 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 IL1RL2Q9HB29 575 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 PNPLA3Q9NST1 481 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 LYARQ9NX58 379 aaKnown RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 IKBKGQ9Y6K9 419 aa9.44□□□□□ -0.9
LDLR-214ENST00000560628 NCOA6Q14686 2063 aaPredicted RBP9.44□□□□□ -0.9
LDLR-214ENST00000560628 FAM90A27PA6NNH2 459 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 TRIM49D1C9J1S8 452 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 PPP6CO00743 305 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 SMIM24O75264 130 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 LRATO95237 230 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 KLK1P06870 262 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 SSTR4P31391 388 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 SERPINB9P50453 376 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 ARFIP1P53367 373 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 CDH13P55290 713 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 NUP107P57740 925 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms