RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 VTI1BQ9UEU0 232 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 CSAG2Q9Y5P2 127 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 DOPEY2Q9Y3R5 2298 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 CPAMD8Q8IZJ3 1885 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 TRBV11-1A0A0K0K1C0 115 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 WASHC1A8K0Z3 465 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 A8MUI8 341 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 TMEM233B4DJY2 109 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 PGRMC2O15173 223 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 BIRC5O15392 142 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 PCDH7O60245 1069 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 MAN1A2O60476 641 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 GUCY1B2O75343 617 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 GPR75O95800 540 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 DDAH2O95865 285 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 TIA1P31483 386 aaKnown RBP eCLIP8.73□□□□□ -1.01
LDLR-211ENST00000560173 TAS2R50P59544 299 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 TRA2BP62995 288 aaKnown RBP8.73□□□□□ -1.01
LDLR-211ENST00000560173 RAE1P78406 368 aaKnown RBP8.73□□□□□ -1.01
LDLR-211ENST00000560173 PLIN5Q00G26 463 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 ACSM2AQ08AH3 577 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 PLEKHN1Q494U1 663 aaPredicted RBP8.73□□□□□ -1.01
LDLR-211ENST00000560173 ACER2Q5QJU3 275 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 NDUFAF5Q5TEU4 345 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 ABHD17BQ5VST6 288 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 GKAP1Q5VSY0 366 aaPredicted RBP8.73□□□□□ -1.01
LDLR-211ENST00000560173 CES4AQ5XG92 561 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 KANK2Q63ZY3 851 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 ACSM2BQ68CK6 577 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 FCRLBQ6BAA4 426 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 GALNT18Q6P9A2 607 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 RGS9BPQ6ZS82 235 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 RNF165Q6ZSG1 346 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 CRLF3Q8IUI8 442 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 NUDCD3Q8IVD9 361 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 MMP21Q8N119 569 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 LGI4Q8N135 537 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 SLC5A8Q8N695 610 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 C7orf57Q8NEG2 295 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 DNAJB14Q8TBM8 379 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 CKAP2Q8WWK9 683 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 DAZLQ92904 295 aaKnown RBP8.73□□□□□ -1.01
LDLR-211ENST00000560173 UCN3Q969E3 161 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 NCLNQ969V3 563 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 VMP1Q96GC9 406 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 ZNF354BQ96LW1 612 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 CCT8L2Q96SF2 557 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 EML4Q9HC35 981 aaKnown RBP8.73□□□□□ -1.01
LDLR-211ENST00000560173 SIRT5Q9NXA8 310 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 PLA2G3Q9NZ20 509 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 LUZP4Q9P127 313 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 TEKT2Q9UIF3 430 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 MCM8Q9UJA3 840 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 ZNF223Q9UK11 482 aaPredicted RBP8.73□□□□□ -1.01
LDLR-211ENST00000560173 B3GNT3Q9Y2A9 372 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 CCL27Q9Y4X3 112 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 PCDHA9Q9Y5H5 950 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 PTGDR2Q9Y5Y4 395 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 CLCA3PQ9Y6N3 262 aa8.73□□□□□ -1.01
LDLR-211ENST00000560173 UTP20O75691 2785 aaKnown RBP8.73□□□□□ -1.01
LDLR-211ENST00000560173 NBPF19A0A087WUL8 3843 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 A0A1W2PS29 197 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 DYTNA2CJ06 578 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 WDR91A4D1P6 747 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 C17orf105B2RV13 164 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 NPIPB8E9PQR5 432 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 RSL1D1O76021 490 aaKnown RBP8.72□□□□□ -1.01
LDLR-211ENST00000560173 WDPCPO95876 746 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 CHEK2O96017 543 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 SERPINE1P05121 402 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 FGF4P08620 206 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 COX7A2P14406 83 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 ALOX15P16050 662 aaPredicted RBP8.72□□□□□ -1.01
LDLR-211ENST00000560173 PRPH2P23942 346 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 TNFSF10P50591 281 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 CLCN2P51788 898 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 ARG2P78540 354 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 TLE1Q04724 770 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 BTKQ06187 659 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 BIKQ13323 160 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 TLR1Q15399 786 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 MEP1AQ16819 746 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 IMPG1Q17R60 797 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 SPDYAQ5MJ70 313 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 DGAT2L6Q6ZPD8 337 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 RPS19BP1Q86WX3 136 aaKnown RBP8.72□□□□□ -1.01
LDLR-211ENST00000560173 ST13P4Q8IZP2 240 aaPredicted RBP8.72□□□□□ -1.01
LDLR-211ENST00000560173 BEST3Q8N1M1 668 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 ARMC10Q8N2F6 343 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 ANKRD42Q8N9B4 389 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 MORN4Q8NDC4 146 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 RAB3IL1Q8TBN0 382 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 SLC2A12Q8TD20 617 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 HAS2Q92819 552 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 TM4SF18Q96CE8 201 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 DGAT2Q96PD7 388 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 PELOQ9BRX2 385 aaKnown RBP8.72□□□□□ -1.01
LDLR-211ENST00000560173 EBPLQ9BY08 206 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 DEFB126Q9BYW3 111 aa8.72□□□□□ -1.01
LDLR-211ENST00000560173 ILKAPQ9H0C8 392 aaPredicted RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms