RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 LRRC25Q8N386 305 aaPredicted RBP9.44□□□□□ -0.9
USP3-216ENST00000559873 NATD1Q8N6N6 113 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 ZFP28Q8NHY6 868 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 DNAJB14Q8TBM8 379 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 APOBEC4Q8WW27 367 aaKnown RBP9.44□□□□□ -0.9
USP3-216ENST00000559873 PPCDCQ96CD2 204 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 CHMP6Q96FZ7 201 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 BBS4Q96RK4 519 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 ARHGAP9Q9BRR9 750 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 CCDC28BQ9BUN5 200 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 REEP4Q9H6H4 257 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 WDR55Q9H6Y2 383 aaPredicted RBP9.44□□□□□ -0.9
USP3-216ENST00000559873 ZNF160Q9HCG1 818 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 NPHS2Q9NP85 383 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 NECTIN3Q9NQS3 549 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 PNO1Q9NRX1 252 aaKnown RBP9.44□□□□□ -0.9
USP3-216ENST00000559873 MRGBPQ9NV56 204 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 TRIM33Q9UPN9 1127 aa9.44□□□□□ -0.9
USP3-216ENST00000559873 CACNA1GO43497 2377 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 A0A0G2JND7 137 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 C17orf105B2RV13 164 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 SCAMP2O15127 329 aaKnown RBP9.43□□□□□ -0.9
USP3-216ENST00000559873 UBDO15205 165 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 PDPK1O15530 556 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 TBX19O60806 448 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 SEC24DO94855 1032 aaPredicted RBP9.43□□□□□ -0.9
USP3-216ENST00000559873 SLITRK5O94991 958 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 ALPPP05187 535 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 SERPINA7P05543 415 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 G6PDP11413 515 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 PORP16435 677 aaPredicted RBP9.43□□□□□ -0.9
USP3-216ENST00000559873 TACR1P25103 407 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 ITGA3P26006 1051 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 XKP51811 444 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 C21orf58P58505 322 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 ID2Q02363 134 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 PTGR1Q14914 329 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 GSTA3Q16772 222 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 SPRED3Q2MJR0 410 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 BTBD16Q32M84 506 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 SLC9B1Q4ZJI4 515 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 VWA5B1Q5TIE3 1220 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 PLAG1Q6DJT9 500 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 JMJD6Q6NYC1 403 aaPredicted RBP9.43□□□□□ -0.9
USP3-216ENST00000559873 LARP4Q71RC2 724 aaKnown RBP eCLIP9.43□□□□□ -0.9
USP3-216ENST00000559873 MAVSQ7Z434 540 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 TICAM1Q8IUC6 712 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 TMEM151BQ8IW70 566 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 OR4N5Q8IXE1 308 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 B3GNT7Q8NFL0 401 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 CLHC1Q8NHS4 586 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.43□□□□□ -0.9
USP3-216ENST00000559873 EXOSC8Q96B26 276 aaKnown RBP9.43□□□□□ -0.9
USP3-216ENST00000559873 ANKRD9Q96BM1 317 aaPredicted RBP9.43□□□□□ -0.9
USP3-216ENST00000559873 VMP1Q96GC9 406 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 ZBTB18Q99592 522 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 DPY30Q9C005 99 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 ING2Q9H160 280 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 PRORYQ9H606 182 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 SLC35C2Q9NQQ7 365 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 FGFR1OP2Q9NVK5 253 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 C5AR2Q9P296 337 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 HEY2Q9UBP5 337 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 KCNMB2Q9Y691 235 aa9.43□□□□□ -0.9
USP3-216ENST00000559873 IGHV3-20A0A0C4DH32 117 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 OR2W5A6NFC9 320 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 MKRN2OSH3BPM6 223 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 ZNF195O14628 629 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 PGRMC2O15173 223 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 AKAP10O43572 662 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 LRATO95237 230 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 ATP1B1P05026 303 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 FURINP09958 794 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 NT5EP21589 574 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 MPIP34949 423 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 IDH3AP50213 366 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 CLCN2P51788 898 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 EFNA3P52797 238 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 ARFIP2P53365 341 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 DIO3P55073 304 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 CLDN8P56748 225 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 SLC26A5P58743 744 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 GNGT1P63211 74 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 PDE7AQ13946 482 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 COL28A1Q2UY09 1125 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 LSM12Q3MHD2 195 aaKnown RBP9.42□□□□□ -0.9
USP3-216ENST00000559873 CPTPQ5TA50 214 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 CPZQ66K79 652 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 SHISA5Q8N114 240 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 GALNT16Q8N428 558 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 GLB1L3Q8NCI6 653 aaPredicted RBP9.42□□□□□ -0.9
USP3-216ENST00000559873 MORN4Q8NDC4 146 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 M1APQ8TC57 530 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 RIT1Q92963 219 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 GFM2Q969S9 779 aaKnown RBP9.42□□□□□ -0.9
USP3-216ENST00000559873 ERP27Q96DN0 273 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 ZBED6CLQ96FA7 236 aaPredicted RBP9.42□□□□□ -0.9
USP3-216ENST00000559873 RILPQ96NA2 401 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 OR52B2Q96RD2 323 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 WDR77Q9BQA1 342 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms