RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CGNQ9P2M7 1197 aaKnown RBP2.8□□□□□ -1.96
VPS13C-208ENST00000559119 NOCTQ9UK39 431 aaKnown RBP2.8□□□□□ -1.96
VPS13C-208ENST00000559119 CFAP43Q8NDM7 1665 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 TOP2BQ02880 1626 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 POLA1P09884 1462 aaPredicted RBP2.79□□□□□ -1.96
VPS13C-208ENST00000559119 RPRD2Q5VT52 1461 aaKnown RBP2.79□□□□□ -1.96
VPS13C-208ENST00000559119 MTUS2Q5JR59 1369 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 PARD3Q8TEW0 1356 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 SYNDIG1LA6NDD5 238 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 RNF212BA8MTL3 300 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 DUSP11O75319 330 aaKnown RBP2.79□□□□□ -1.96
VPS13C-208ENST00000559119 TPM3P06753 285 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 BDNFP23560 247 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 ACKR3P25106 362 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 SRD5A2P31213 254 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 FHITP49789 147 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 GMPSP49915 693 aaPredicted RBP2.79□□□□□ -1.96
VPS13C-208ENST00000559119 AIMP1Q12904 312 aaKnown RBP2.79□□□□□ -1.96
VPS13C-208ENST00000559119 OR5M11Q96RB7 305 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 DPEP3Q9H4B8 488 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 IKZF5Q9H5V7 419 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 IMPAD1Q9NX62 359 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 TMEM9Q9P0T7 183 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 KLHL21Q9UJP4 597 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 KLK12Q9UKR0 248 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 HECW1Q76N89 1606 aa2.79□□□□□ -1.96
VPS13C-208ENST00000559119 BICRAQ9NZM4 1560 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 CUX1P39880 1505 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 CLASP1Q7Z460 1538 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 DENND4BO75064 1496 aaPredicted RBP2.78□□□□□ -1.96
VPS13C-208ENST00000559119 CAMSAP2Q08AD1 1489 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 GAPVD1Q14C86 1478 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 RTEL1-TNFRSF6BF6WH68 1400 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 FGD6Q6ZV73 1430 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 ANKRD30BQ9BXX2 1392 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 URADA6NGE7 173 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 EFCAB7A8K855 629 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 PPIP5K2O43314 1243 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 LATO43561 262 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 ZNF861PO60384 105 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 REC8O95072 547 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 SLC35E2P0CK97 266 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 GPR50Q13585 617 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 SIM2Q14190 667 aaPredicted RBP2.78□□□□□ -1.96
VPS13C-208ENST00000559119 ANKRD55Q3KP44 614 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 PAN3Q58A45 887 aaKnown RBP2.78□□□□□ -1.96
VPS13C-208ENST00000559119 HSP90AB3PQ58FF7 597 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 ODF2Q5BJF6 829 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 SPOUT1Q5T280 376 aaKnown RBP2.78□□□□□ -1.96
VPS13C-208ENST00000559119 ALKBH5Q6P6C2 394 aaKnown RBP2.78□□□□□ -1.96
VPS13C-208ENST00000559119 CACUL1Q86Y37 369 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 MKXQ8IYA7 352 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 GPR137CQ8N3F9 429 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 MNS1Q8NEH6 495 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 VSIG2Q96IQ7 327 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 MYCBPQ99417 103 aaPredicted RBP2.78□□□□□ -1.96
VPS13C-208ENST00000559119 SLC25A23Q9BV35 468 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 CYTL1Q9NRR1 136 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 RAI14Q9P0K7 980 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 CTNNA3Q9UI47 895 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 MUC19Q7Z5P9 8384 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 SMARCA4P51532 1647 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 BIVM-ERCC5R4GMW8 1640 aa2.78□□□□□ -1.96
VPS13C-208ENST00000559119 TEX14Q8IWB6 1497 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 UHRF1BP1Q6BDS2 1440 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 FAM231BA6NCW3 169 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 TRIM49D1C9J1S8 452 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 KRTAP4-16G5E9R7 235 aaPredicted RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 ACSL4O60488 711 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 GRAP2O75791 330 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 DUSP14O95147 198 aaKnown RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 IGHDP01880 384 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 LDHCP07864 332 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 CCDC159P0C7I6 412 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 CCDC172P0C7W6 258 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 CALML3P27482 149 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 NUCB2P80303 420 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 SLC17A1Q14916 467 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 ZNF658Q5TYW1 1059 aaPredicted RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 ZNF776Q68DI1 518 aaPredicted RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 ZNF770Q6IQ21 691 aaPredicted RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 TATDN1Q6P1N9 297 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 ABI3BPQ7Z7G0 1075 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 MEX3DQ86XN8 651 aaKnown RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 EGFL6Q8IUX8 553 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 CEND1Q8N111 149 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 CNPY4Q8N129 248 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 KRT222Q8N1A0 295 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 FAM184AQ8NB25 1140 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 MRPS27Q92552 414 aaKnown RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 SIPA1Q96FS4 1042 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 TECTBQ96PL2 329 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 ZNF184Q99676 751 aaPredicted RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 PRMT1Q99873 361 aaKnown RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 RBM28Q9NW13 759 aaKnown RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 LIPGQ9Y5X9 500 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 TCOF1Q13428 1488 aaKnown RBP2.77□□□□□ -1.97
VPS13C-208ENST00000559119 FYCO1Q9BQS8 1478 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 MBD5Q9P267 1494 aa2.77□□□□□ -1.97
VPS13C-208ENST00000559119 PTPRKQ15262 1439 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms