RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 Q6ZRG5 221 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 C9orf47Q6ZRZ4 202 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 FOXL2NBQ6ZUU3 175 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 NFE4Q86UQ8 179 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ITIH5Q86UX2 942 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ZDHHC17Q8IUH5 632 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 CIARTQ8N365 385 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ZCCHC7Q8N3Z6 543 aaKnown RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 RELL2Q8NC24 303 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 OR52K2Q8NGK3 314 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 HPSE2Q8WWQ2 592 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 TMEM37Q8WXS4 190 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ZNF75CPQ92670 426 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 CASP10Q92851 521 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 SENP5Q96HI0 755 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 MED30Q96HR3 178 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 LMLNQ96KR4 655 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 C2orf48Q96LS8 159 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ZNF607Q96SK3 696 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 TMEM204Q9BSN7 226 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 TCHPQ9BT92 498 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 C1QTNF4Q9BXJ3 329 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 MRPL13Q9BYD1 178 aaKnown RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 NLNQ9BYT8 704 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 WDR76Q9H967 626 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 CALHM2Q9HA72 323 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 SIX2Q9NPC8 291 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 GDF3Q9NR23 364 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 MED17Q9NVC6 651 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 UTP6Q9NYH9 597 aaKnown RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 C6orf203Q9P0P8 240 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 P2RX2Q9UBL9 471 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 EPHA6Q9UF33 1036 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 MIOXQ9UGB7 285 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ZNF490Q9ULM2 529 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ASB3Q9Y575 518 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 CC2D2AQ9P2K1 1620 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 SPATA31D1Q6ZQQ2 1576 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 NEDD4P46934 1319 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 EME2A4GXA9 379 aaPredicted RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 RNF222A6NCQ9 220 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 MYMKA6NI61 221 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 AP3B1O00203 1094 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 SLC1A7O00341 560 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 SDHDO14521 159 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 SH2D1BO14796 132 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 ARPC1BO15143 372 aaKnown RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 SIGLEC5O15389 551 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 KLHL41O60662 606 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 TBX19O60806 448 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 ZNF821O75541 412 aaPredicted RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 ANXA9O76027 345 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 OAZ2O95190 189 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 SEC24AO95486 1093 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 EDN1P05305 212 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 UGT2B4P06133 528 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 PLA2G2AP14555 144 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 GP9P14770 177 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 CCNCP24863 283 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 MARK3P27448 753 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 DPP4P27487 766 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 PTPN6P29350 595 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 FEN1P39748 380 aaKnown RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 CDKN2AP42771 156 aaKnown RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 LINC00205P59089 165 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 DRP2Q13474 957 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 KLF5Q13887 457 aaPredicted RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 FAM106AQ4KMX7 169 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 SPANXN4Q5MJ08 99 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 ARHGAP17Q68EM7 881 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 ASPHD2Q6ICH7 369 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 PMF1Q6P1K2 205 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 CWC27Q6UX04 472 aaKnown RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 RBMS3Q6XE24 437 aaKnown RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 Q6ZVQ6 151 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 Q71RC1 249 aaPredicted RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 C17orf64Q86WR6 236 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 ZNF679Q8IYX0 411 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 DND1Q8IYX4 353 aaKnown RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 NAGSQ8N159 534 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 MAB21L3Q8N8X9 362 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 MLKLQ8NB16 471 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 ZNF397Q8NF99 534 aaPredicted RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 OR2T11Q8NH01 316 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 OR2T3Q8NH03 318 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 GIPC3Q8TF64 312 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 SUSD6Q92537 303 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 CD101Q93033 1021 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 MRPL24Q96A35 216 aaKnown RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 OMA1Q96E52 524 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 LURAP1Q96LR2 239 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 VPS35Q96QK1 796 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 ACCSQ96QU6 501 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 RAB40CQ96S21 281 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 KRT12Q99456 494 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 NKX3-1Q99801 234 aaPredicted RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 NDUFAF3Q9BU61 184 aa2.76□□□□□ -1.97
TRAV28-201ENST00000557548 WRAP53Q9BUR4 548 aaKnown RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 TDRD1Q9BXT4 1180 aaKnown RBP2.76□□□□□ -1.97
TRAV28-201ENST00000557548 LRRCC1Q9C099 1032 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms