RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PCDHGB3Q9Y5G1 929 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 A0A1B0GTW7 788 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 WASHC1A8K0Z3 465 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 HMGN4O00479 90 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 AXIN1O15169 862 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 P2RX6O15547 441 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 C9P02748 559 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 TFPTP0C1Z6 253 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 ITGA2P17301 1181 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 RPS26P62854 115 aaKnown RBP24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 RACK1P63244 317 aaKnown RBP24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 TP53BP2Q13625 1128 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 ELOCQ15369 112 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 ANKRD34AQ69YU3 496 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 ABHD13Q7L211 337 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 TSEN54Q7Z6J9 526 aaKnown RBP24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 RERGQ96A58 199 aaPredicted RBP24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 MYCBPQ99417 103 aaPredicted RBP24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 AMBRA1Q9C0C7 1298 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 RUBCNLQ9H714 662 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 NDUFAF4Q9P032 175 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 RAB23Q9ULC3 237 aa24.88■■□□□ 1.57
CCDC88C-205ENST00000553403 PDE9AO76083 593 aa24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 ITGAMP11215 1152 aa24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 NME1P15531 152 aaKnown RBP24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 IGFBP5P24593 272 aa24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 BUD31P41223 144 aaPredicted RBP24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 ANXA11P50995 505 aaKnown RBP24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 KCNAB2Q13303 367 aa24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 ARMC6Q6NXE6 501 aa24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 SIX5Q8N196 739 aa24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 CAMKK1Q8N5S9 505 aa24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 ZNF655Q8N720 491 aaPredicted RBP24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 TMEM19Q96HH6 336 aa24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 MUS81Q96NY9 551 aa24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 ZCCHC3Q9NUD5 404 aaKnown RBP24.87■■□□□ 1.57
CCDC88C-205ENST00000553403 TMEM247A6NEH6 219 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 TRIM64CA6NLI5 447 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 B4DGG1 531 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 H0YGG7 62 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 ADAMDEC1O15204 470 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 SLC16A6O15403 523 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 ZSCAN9O15535 394 aaPredicted RBP24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 SEC24DO94855 1032 aaPredicted RBP24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 BCHEP06276 602 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 MPIP34949 423 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 ARF3P61204 181 aaPredicted RBP24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 TNFRSF17Q02223 184 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 KDM4DQ6B0I6 523 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 THAP5Q7Z6K1 395 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 C8orf59Q8N0T1 100 aaPredicted RBP24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 DEFB119Q8N690 84 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 OR56A1Q8NGH5 318 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 ZNF681Q96N22 645 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 BARD1Q99728 777 aaKnown RBP24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 SERHL2Q9H4I8 314 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 PDP1Q9P0J1 537 aaPredicted RBP24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 KCMF1Q9P0J7 381 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 ZNF780BQ9Y6R6 833 aa24.86■■□□□ 1.57
CCDC88C-205ENST00000553403 A0A087WXM4 84 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 EME2A4GXA9 379 aaPredicted RBP24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 TLR4O00206 839 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 B3GALT2O43825 422 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 PVRP15151 417 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 PXNP49023 591 aaPredicted RBP24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 KHKP50053 298 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 DAPP51397 102 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 IL18R1Q13478 541 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 FRMPD2BQ6IN97 320 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 SATL1Q86VE3 508 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 GKN2Q86XP6 184 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 CCDC116Q8IYX3 515 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 SAMD14Q8IZD0 417 aaPredicted RBP24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 CLDN23Q96B33 292 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 C10orf90Q96M02 699 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 ZNF300Q96RE9 604 aaPredicted RBP24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 KLHL25Q9H0H3 589 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 OR51I1Q9H343 314 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 P2RX2Q9UBL9 471 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 POMT2Q9UKY4 750 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 LOC105369274A0A096LPK9 316 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 LOC102723532A0A0G2JNH3 316 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 BMP10O95393 424 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 MATN1P21941 496 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 DUSP2Q05923 314 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 CHCHD2P9Q5T1J5 151 aaPredicted RBP24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 CYP4Z1Q86W10 505 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 OR4N4Q8N0Y3 316 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 ZCCHC10Q8TBK6 192 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 MIPOL1Q8TD10 442 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 KLHL6Q8WZ60 621 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 RAB8BQ92930 207 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 UCK1Q9HA47 277 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 MS4A12Q9NXJ0 267 aa24.85■■□□□ 1.57
CCDC88C-205ENST00000553403 LOC100130705A0A1B0GUX0 176 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 FAM86C2PA6NEL3 165 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 FHP07954 510 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 CPN2P22792 545 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 RRM2P31350 389 aa24.84■■□□□ 1.57
CCDC88C-205ENST00000553403 FEN1P39748 380 aaKnown RBP24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms