RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 CAMK2AQ9UQM7 478 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 SLC6A5Q9Y345 797 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 PSAT1Q9Y617 370 aa8.33□□□□□ -1.08
SYNE2-209ENST00000553308 MAP1AP78559 2803 aaPredicted RBP8.33□□□□□ -1.08
SYNE2-209ENST00000553308 FAM95CA0A1B0GW59 222 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 MBD3L4A6NDZ8 208 aaPredicted RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 MBD3L3A6NE82 208 aaPredicted RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 MBD3L5A6NJ08 208 aaPredicted RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 H7C1Q1 480 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 TAPBPO15533 448 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 TRIM3O75382 744 aaPredicted RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 PRKRAO75569 313 aaKnown RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 TRAPPC6AO75865 159 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 GOSR1O95249 250 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 C1QAP02745 245 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 CPN2P22792 545 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 ATP5A1P25705 553 aaKnown RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 CTSSP25774 331 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 MSH2P43246 934 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 STT3AP46977 705 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 HERVK_113P63132 956 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 ERVK-8P63133 956 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 IGLV3-21P80748 117 aaPredicted RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 TGM3Q08188 693 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 TBL3Q12788 808 aaKnown RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 DOC2AQ14183 400 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 BICRALQ6AI39 1079 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 TMEM64Q6YI46 380 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 ADAMTSL2Q86TH1 951 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 PM20D2Q8IYS1 436 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 NKAPQ8N5F7 415 aaKnown RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 SLC15A4Q8N697 577 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 ACOT4Q8N9L9 421 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 SNX31Q8N9S9 440 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 TRIM58Q8NG06 486 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 MBD3L2Q8NHZ7 208 aaPredicted RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 ANKRD7Q92527 254 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 ESAMQ96AP7 390 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 FBXL20Q96IG2 436 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 REPIN1Q9BWE0 567 aaKnown RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 SORBS1Q9BX66 1292 aaKnown RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 ERVK-6Q9BXR3 956 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 MS4A8Q9BY19 250 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 PITHD1Q9GZP4 211 aaPredicted RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 WWTR1Q9GZV5 400 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 PRDM14Q9GZV8 571 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 EHD1Q9H4M9 534 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 DNAJC11Q9NVH1 559 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 WWOXQ9NZC7 414 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 GPRC5BQ9NZH0 403 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 JKAMPQ9P055 326 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 CTNNAL1Q9UBT7 734 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 CHMP2BQ9UQN3 213 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 ERVK-19Q9WJR5 959 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 NSD1Q96L73 2696 aaPredicted RBP8.32□□□□□ -1.08
SYNE2-209ENST00000553308 FREM3P0C091 2139 aa8.32□□□□□ -1.08
SYNE2-209ENST00000553308 NINQ8N4C6 2090 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 CD8B2A6NJW9 211 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 FAM171A2A8MVW0 826 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 SAP18O00422 153 aaKnown RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 DNALI1O14645 258 aaPredicted RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 CLGNO14967 610 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 SMAD7O15105 426 aaKnown RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 SCELO95171 688 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 ACSL3O95573 720 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 BMP7P18075 431 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 EPORP19235 508 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 HIST1H1TP22492 207 aaPredicted RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 SERPINB3P29508 390 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 CDC25BP30305 580 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 OPRM1P35372 400 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 SOX18P35713 384 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 ELK3P41970 407 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 SSR2P43308 183 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 HSPA7P48741 367 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 CDK9P50750 372 aaKnown RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 TAS2R39P59534 338 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 PLIN5Q00G26 463 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 EBPQ15125 230 aaKnown RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 TGFBIQ15582 683 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 NTRK2Q16620 822 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 FNDC7Q5VTL7 733 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 C18orf63Q68DL7 685 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 VASNQ6EMK4 673 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 RNF111Q6ZNA4 994 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 SLC29A4Q7RTT9 530 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 ZC3HC1Q86WB0 502 aaKnown RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 DND1Q8IYX4 353 aaKnown RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 SPATA6LQ8N4H0 392 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 C9orf106Q8NAJ2 232 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 BBOF1Q8ND07 529 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 LRRN4CLQ8ND94 238 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 ZNF473Q8WTR7 871 aaKnown RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 ZNF592Q92610 1267 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 DIO2Q92813 273 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 WDR34Q96EX3 536 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 PTCD3Q96EY7 689 aaKnown RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 WDYHV1Q96HA8 205 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 ART5Q96L15 291 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 NAT9Q9BTE0 207 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms