RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TIGD6Q17RP2 521 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 BTBD16Q32M84 506 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ENPP7Q6UWV6 458 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 AHSA2Q719I0 299 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 RD3Q7Z3Z2 195 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 RAB44Q7Z6P3 723 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 TMEM179BQ7Z7N9 219 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 DTX3Q8N9I9 347 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 OR4L1Q8NH43 312 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 FAM174AQ8TBP5 190 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 TMEM80Q96HE8 168 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 METTL2AQ96IZ6 378 aaKnown RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 PPM1MQ96MI6 270 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 CCDC115Q96NT0 180 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 KCNA7Q96RP8 456 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ABCG8Q9H221 673 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 MMP28Q9H239 520 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 KCNN2Q9H2S1 579 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 TUBB1Q9H4B7 451 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 SLC32A1Q9H598 525 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 LIN7BQ9HAP6 207 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ZFYVE1Q9HBF4 777 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 MARCH4Q9P2E8 410 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ADGRE2Q9UHX3 823 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 TRMT6Q9UJA5 497 aaKnown RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 TMPRSS11EQ9UL52 423 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 PKP3Q9Y446 797 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 EPG5Q9HCE0 2579 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ATP6V1G2-DDX39BF2Z307 99 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 M0R082 166 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 PPP6CO00743 305 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 CD3EAPO15446 510 aaKnown RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 NME1P15531 152 aaKnown RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 SPINK2P20155 84 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 KRT20P35900 424 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 GRK6P43250 576 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 GNPDA1P46926 289 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 GZMKP49863 264 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 HNRNPKP61978 463 aaKnown RBP eCLIP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 TNK1Q13470 666 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 SMN1Q16637 294 aaKnown RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ALG11Q2TAA5 492 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 PRRT3Q5FWE3 981 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF789Q5FWF6 425 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 NDUFAF5Q5TEU4 345 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 MACC1Q6ZN28 852 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 SLC46A3Q7Z3Q1 461 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 CILP2Q8IUL8 1156 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 OXR1Q8N573 874 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 DPP10Q8N608 796 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 PTGR2Q8N8N7 351 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF548Q8NEK5 533 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 OR2T12Q8NG77 320 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 LHFPL5Q8TAF8 219 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 UBASH3BQ8TF42 649 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 OR1E3Q8WZA6 343 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 EXT2Q93063 718 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 FAM162AQ96A26 154 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 SH3KBP1Q96B97 665 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 PDXPQ96GD0 296 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 Q96MT0 163 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 RIOK2Q9BVS4 552 aaKnown RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 PRRG3Q9BZD7 231 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 SLC22A4Q9H015 551 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 NIPAL2Q9H841 368 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 FGF22Q9HCT0 170 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ZIM2Q9NZV7 527 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 FKBPLQ9UIM3 349 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 KLHL21Q9UJP4 597 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 UTS2RQ9UKP6 389 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 RIMKLBQ9ULI2 386 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 SNX7Q9UNH6 387 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 U3KQV3 271 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 LRP4O75096 1905 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 DSPP15924 2871 aaKnown RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 E5RI56 91 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SIGLEC6O43699 453 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 OR2B3O76000 313 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 S1PR4O95977 384 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 ALPPP05187 535 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 ADRB1P08588 477 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 PRSS56P0CW18 603 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF30P17039 623 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 MSH3P20585 1137 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 MYL9P24844 172 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 HMGCLP35914 325 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 TALDO1P37837 337 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SPINT3P49223 89 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CDKN1CP49918 316 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 HK3P52790 923 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 SRP54P61011 504 aaKnown RBP7.29□□□□□ -1.24
LIMA1-216ENST00000552909 NFATC4Q14934 902 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 DEFB133Q30KQ1 61 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 ATP6AP1LQ52LC2 224 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 CCDC157Q569K6 752 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 ZRANB3Q5FWF4 1079 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 TIGD3Q6B0B8 471 aa7.29□□□□□ -1.24
LIMA1-216ENST00000552909 RAET1GQ6H3X3 334 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms