RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SPIN4Q56A73 249 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 TMEM201Q5SNT2 666 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 MEDAGQ5VYS4 303 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 SAXO2Q658L1 398 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 PPP2R2DQ66LE6 453 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 C12orf73Q69YU5 71 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 C22orf42Q6IC83 251 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 FAM71E1Q6IPT2 247 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 C22orf39Q6P5X5 142 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 FAM131AQ6UXB0 335 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 OLIG3Q7RTU3 272 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 NOXA1Q86UR1 476 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 TRIM69Q86WT6 500 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 CMTM8Q8IZV2 173 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 RDH10Q8IZV5 341 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 TAGAPQ8N103 731 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 CADM2Q8N3J6 435 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 RASGEF1AQ8N9B8 481 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 NLGN4YQ8NFZ3 816 aaPredicted RBP5.15□□□□□ -1.58
LIMA1-212ENST00000552491 OR7G1Q8NGA0 311 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 OR9Q1Q8NGQ5 310 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 OR56A3Q8NH54 315 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF461Q8TAF7 563 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF480Q8WV37 535 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 ASZ1Q8WWH4 475 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 RASSF5Q8WWW0 418 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 KLHL6Q8WZ60 621 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 TM9SF4Q92544 642 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 SLC25A46Q96AG3 418 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 ZFYVE19Q96K21 471 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 MSLNLQ96KJ4 702 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 LMLNQ96KR4 655 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 NRTNQ99748 197 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 TSSK6Q9BXA6 273 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 UCK2Q9BZX2 261 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 SMG9Q9H0W8 520 aaKnown RBP5.15□□□□□ -1.58
LIMA1-212ENST00000552491 ABCG4Q9H172 646 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 SLA2Q9H6Q3 261 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 MVB12BQ9H7P6 319 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 TMEM39AQ9NV64 488 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 TAAR2Q9P1P5 351 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 SEC14L4Q9UDX3 406 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 NDOR1Q9UHB4 597 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 PLXNA2O75051 1894 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 SEC14L5O43304 696 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 AP2A2O94973 939 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 OLFM2O95897 454 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 IFNW1P05000 195 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 ALPPP05187 535 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 IL3P08700 152 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 NPPBP16860 134 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 GJA1P17302 382 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 MYL9P24844 172 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 SDC2P34741 201 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 CD79BP40259 229 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 ETV5P41161 510 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 ETV1P50549 477 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 GAS1P54826 345 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 TBPL1P62380 186 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 RPS25P62851 125 aaKnown RBP5.15□□□□□ -1.59
LIMA1-212ENST00000552491 TLE2Q04725 743 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 TSTA3Q13630 321 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-212ENST00000552491 EFR3AQ14156 821 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 SLBPQ14493 270 aaKnown RBP eCLIP5.15□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF630Q2M218 657 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-212ENST00000552491 SLC35F1Q5T1Q4 408 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 MFSD4BQ5TF39 518 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 OR2G6Q5TZ20 316 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 RNLSQ5VYX0 342 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 ZDHHC20Q5W0Z9 365 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 PGBD2Q6P3X8 592 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 TNFAIP8L2Q6P589 184 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-212ENST00000552491 TRIM40Q6P9F5 258 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 BRAT1Q6PJG6 821 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 Q6ZVU0 165 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 METTL3Q86U44 580 aaKnown RBP5.15□□□□□ -1.59
LIMA1-212ENST00000552491 MEX3DQ86XN8 651 aaKnown RBP5.15□□□□□ -1.59
LIMA1-212ENST00000552491 NPAS4Q8IUM7 802 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 OXR1Q8N573 874 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 HORMAD2Q8N7B1 307 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 ZSCAN1Q8NBB4 408 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 PROKR2Q8NFJ6 384 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 SLC38A5Q8WUX1 472 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 BTN2A2Q8WVV5 523 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 AUTS2Q8WXX7 1259 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 RAB8BQ92930 207 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 PPCDCQ96CD2 204 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 TRMT2BQ96GJ1 504 aaKnown RBP5.15□□□□□ -1.59
LIMA1-212ENST00000552491 DCLRE1CQ96SD1 692 aaKnown RBP5.15□□□□□ -1.59
LIMA1-212ENST00000552491 GPA33Q99795 319 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 SLC22A4Q9H015 551 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 ELAC1Q9H777 363 aaKnown RBP5.15□□□□□ -1.59
LIMA1-212ENST00000552491 DMRT3Q9NQL9 472 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 ACOXLQ9NUZ1 547 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 SNX7Q9UNH6 387 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 DENND4CQ5VZ89 1909 aa5.15□□□□□ -1.59
LIMA1-212ENST00000552491 C5orf42Q9H799 3197 aa5.14□□□□□ -1.59
LIMA1-212ENST00000552491 TCF20Q9UGU0 1960 aaKnown RBP5.14□□□□□ -1.59
LIMA1-212ENST00000552491 KIF26AQ9ULI4 1882 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-212ENST00000552491 TRAV19A0A0A6YYK7 116 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms